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The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era

BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a pandemic of pneumonia spreading around the world, leading to serious threats to public health and attracting enormous attention. There is an urgent need for sensitive diagnostic testing implementation to control an...

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Autores principales: Cuong, Hoang Quoc, Hai, Nguyen Duc, Linh, Hoang Thuy, Hieu, Nguyen Trung, Anh, Nguyen Hoang, Ton, Tran, Dong, Tran Cat, Thao, Vu Thanh, Tuoi, Do Thi Hong, Tuan, Nguyen Duc, Loan, Huynh Thi Kim, Long, Nguyen Thanh, Thang, Cao Minh, Thao, Nguyen Thi Thanh, Lan, Phan Trong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8337105/
https://www.ncbi.nlm.nih.gov/pubmed/34368349
http://dx.doi.org/10.1155/2021/5516344
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author Cuong, Hoang Quoc
Hai, Nguyen Duc
Linh, Hoang Thuy
Hieu, Nguyen Trung
Anh, Nguyen Hoang
Ton, Tran
Dong, Tran Cat
Thao, Vu Thanh
Tuoi, Do Thi Hong
Tuan, Nguyen Duc
Loan, Huynh Thi Kim
Long, Nguyen Thanh
Thang, Cao Minh
Thao, Nguyen Thi Thanh
Lan, Phan Trong
author_facet Cuong, Hoang Quoc
Hai, Nguyen Duc
Linh, Hoang Thuy
Hieu, Nguyen Trung
Anh, Nguyen Hoang
Ton, Tran
Dong, Tran Cat
Thao, Vu Thanh
Tuoi, Do Thi Hong
Tuan, Nguyen Duc
Loan, Huynh Thi Kim
Long, Nguyen Thanh
Thang, Cao Minh
Thao, Nguyen Thi Thanh
Lan, Phan Trong
author_sort Cuong, Hoang Quoc
collection PubMed
description BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a pandemic of pneumonia spreading around the world, leading to serious threats to public health and attracting enormous attention. There is an urgent need for sensitive diagnostic testing implementation to control and manage SARS-CoV-2 in public health laboratories. The quantitative reverse transcription PCR (RT-qPCR) assay is the gold standard method, but the sensitivity and specificity of SARS-CoV-2 testing are dependent on a number of factors. METHODS: We synthesized RNA based on the genes published to estimate the concentration of inactivated virus samples in a biosafety level 3 laboratory. The limit of detection (LOD), linearity, accuracy, and precision were evaluated according to the bioanalytical method validation guidelines. RESULTS: We found that the LOD reached around 3 copies/reaction. Furthermore, intra-assay precision, accuracy, and linearity met the accepted criterion with an RSD for copies of less than 25%, and linear regression met the accepted R(2) of 0.98. CONCLUSIONS: We suggest that synthesized RNA based on the database of the NCBI gene bank for estimating the concentration of inactivated virus samples provides a potential opportunity for reliable testing to diagnose coronavirus disease 2019 (COVID-19) as well as limit the spread of the disease. This method may be relatively quick and inexpensive, and it may be useful for developing countries during the pandemic era. In the long term, it is also applicable for evaluation, verification, validation, and external quality assessment.
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spelling pubmed-83371052021-08-05 The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era Cuong, Hoang Quoc Hai, Nguyen Duc Linh, Hoang Thuy Hieu, Nguyen Trung Anh, Nguyen Hoang Ton, Tran Dong, Tran Cat Thao, Vu Thanh Tuoi, Do Thi Hong Tuan, Nguyen Duc Loan, Huynh Thi Kim Long, Nguyen Thanh Thang, Cao Minh Thao, Nguyen Thi Thanh Lan, Phan Trong Biomed Res Int Research Article BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a pandemic of pneumonia spreading around the world, leading to serious threats to public health and attracting enormous attention. There is an urgent need for sensitive diagnostic testing implementation to control and manage SARS-CoV-2 in public health laboratories. The quantitative reverse transcription PCR (RT-qPCR) assay is the gold standard method, but the sensitivity and specificity of SARS-CoV-2 testing are dependent on a number of factors. METHODS: We synthesized RNA based on the genes published to estimate the concentration of inactivated virus samples in a biosafety level 3 laboratory. The limit of detection (LOD), linearity, accuracy, and precision were evaluated according to the bioanalytical method validation guidelines. RESULTS: We found that the LOD reached around 3 copies/reaction. Furthermore, intra-assay precision, accuracy, and linearity met the accepted criterion with an RSD for copies of less than 25%, and linear regression met the accepted R(2) of 0.98. CONCLUSIONS: We suggest that synthesized RNA based on the database of the NCBI gene bank for estimating the concentration of inactivated virus samples provides a potential opportunity for reliable testing to diagnose coronavirus disease 2019 (COVID-19) as well as limit the spread of the disease. This method may be relatively quick and inexpensive, and it may be useful for developing countries during the pandemic era. In the long term, it is also applicable for evaluation, verification, validation, and external quality assessment. Hindawi 2021-08-03 /pmc/articles/PMC8337105/ /pubmed/34368349 http://dx.doi.org/10.1155/2021/5516344 Text en Copyright © 2021 Hoang Quoc Cuong et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Cuong, Hoang Quoc
Hai, Nguyen Duc
Linh, Hoang Thuy
Hieu, Nguyen Trung
Anh, Nguyen Hoang
Ton, Tran
Dong, Tran Cat
Thao, Vu Thanh
Tuoi, Do Thi Hong
Tuan, Nguyen Duc
Loan, Huynh Thi Kim
Long, Nguyen Thanh
Thang, Cao Minh
Thao, Nguyen Thi Thanh
Lan, Phan Trong
The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era
title The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era
title_full The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era
title_fullStr The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era
title_full_unstemmed The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era
title_short The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era
title_sort production of standardized samples with known concentrations for severe acute respiratory syndrome coronavirus 2 rt-qpcr testing validation for developing countries in the period of the pandemic era
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8337105/
https://www.ncbi.nlm.nih.gov/pubmed/34368349
http://dx.doi.org/10.1155/2021/5516344
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