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The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era
BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a pandemic of pneumonia spreading around the world, leading to serious threats to public health and attracting enormous attention. There is an urgent need for sensitive diagnostic testing implementation to control an...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8337105/ https://www.ncbi.nlm.nih.gov/pubmed/34368349 http://dx.doi.org/10.1155/2021/5516344 |
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author | Cuong, Hoang Quoc Hai, Nguyen Duc Linh, Hoang Thuy Hieu, Nguyen Trung Anh, Nguyen Hoang Ton, Tran Dong, Tran Cat Thao, Vu Thanh Tuoi, Do Thi Hong Tuan, Nguyen Duc Loan, Huynh Thi Kim Long, Nguyen Thanh Thang, Cao Minh Thao, Nguyen Thi Thanh Lan, Phan Trong |
author_facet | Cuong, Hoang Quoc Hai, Nguyen Duc Linh, Hoang Thuy Hieu, Nguyen Trung Anh, Nguyen Hoang Ton, Tran Dong, Tran Cat Thao, Vu Thanh Tuoi, Do Thi Hong Tuan, Nguyen Duc Loan, Huynh Thi Kim Long, Nguyen Thanh Thang, Cao Minh Thao, Nguyen Thi Thanh Lan, Phan Trong |
author_sort | Cuong, Hoang Quoc |
collection | PubMed |
description | BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a pandemic of pneumonia spreading around the world, leading to serious threats to public health and attracting enormous attention. There is an urgent need for sensitive diagnostic testing implementation to control and manage SARS-CoV-2 in public health laboratories. The quantitative reverse transcription PCR (RT-qPCR) assay is the gold standard method, but the sensitivity and specificity of SARS-CoV-2 testing are dependent on a number of factors. METHODS: We synthesized RNA based on the genes published to estimate the concentration of inactivated virus samples in a biosafety level 3 laboratory. The limit of detection (LOD), linearity, accuracy, and precision were evaluated according to the bioanalytical method validation guidelines. RESULTS: We found that the LOD reached around 3 copies/reaction. Furthermore, intra-assay precision, accuracy, and linearity met the accepted criterion with an RSD for copies of less than 25%, and linear regression met the accepted R(2) of 0.98. CONCLUSIONS: We suggest that synthesized RNA based on the database of the NCBI gene bank for estimating the concentration of inactivated virus samples provides a potential opportunity for reliable testing to diagnose coronavirus disease 2019 (COVID-19) as well as limit the spread of the disease. This method may be relatively quick and inexpensive, and it may be useful for developing countries during the pandemic era. In the long term, it is also applicable for evaluation, verification, validation, and external quality assessment. |
format | Online Article Text |
id | pubmed-8337105 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-83371052021-08-05 The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era Cuong, Hoang Quoc Hai, Nguyen Duc Linh, Hoang Thuy Hieu, Nguyen Trung Anh, Nguyen Hoang Ton, Tran Dong, Tran Cat Thao, Vu Thanh Tuoi, Do Thi Hong Tuan, Nguyen Duc Loan, Huynh Thi Kim Long, Nguyen Thanh Thang, Cao Minh Thao, Nguyen Thi Thanh Lan, Phan Trong Biomed Res Int Research Article BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a pandemic of pneumonia spreading around the world, leading to serious threats to public health and attracting enormous attention. There is an urgent need for sensitive diagnostic testing implementation to control and manage SARS-CoV-2 in public health laboratories. The quantitative reverse transcription PCR (RT-qPCR) assay is the gold standard method, but the sensitivity and specificity of SARS-CoV-2 testing are dependent on a number of factors. METHODS: We synthesized RNA based on the genes published to estimate the concentration of inactivated virus samples in a biosafety level 3 laboratory. The limit of detection (LOD), linearity, accuracy, and precision were evaluated according to the bioanalytical method validation guidelines. RESULTS: We found that the LOD reached around 3 copies/reaction. Furthermore, intra-assay precision, accuracy, and linearity met the accepted criterion with an RSD for copies of less than 25%, and linear regression met the accepted R(2) of 0.98. CONCLUSIONS: We suggest that synthesized RNA based on the database of the NCBI gene bank for estimating the concentration of inactivated virus samples provides a potential opportunity for reliable testing to diagnose coronavirus disease 2019 (COVID-19) as well as limit the spread of the disease. This method may be relatively quick and inexpensive, and it may be useful for developing countries during the pandemic era. In the long term, it is also applicable for evaluation, verification, validation, and external quality assessment. Hindawi 2021-08-03 /pmc/articles/PMC8337105/ /pubmed/34368349 http://dx.doi.org/10.1155/2021/5516344 Text en Copyright © 2021 Hoang Quoc Cuong et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Cuong, Hoang Quoc Hai, Nguyen Duc Linh, Hoang Thuy Hieu, Nguyen Trung Anh, Nguyen Hoang Ton, Tran Dong, Tran Cat Thao, Vu Thanh Tuoi, Do Thi Hong Tuan, Nguyen Duc Loan, Huynh Thi Kim Long, Nguyen Thanh Thang, Cao Minh Thao, Nguyen Thi Thanh Lan, Phan Trong The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era |
title | The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era |
title_full | The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era |
title_fullStr | The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era |
title_full_unstemmed | The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era |
title_short | The Production of Standardized Samples with Known Concentrations for Severe Acute Respiratory Syndrome Coronavirus 2 RT-qPCR Testing Validation for Developing Countries in the Period of the Pandemic Era |
title_sort | production of standardized samples with known concentrations for severe acute respiratory syndrome coronavirus 2 rt-qpcr testing validation for developing countries in the period of the pandemic era |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8337105/ https://www.ncbi.nlm.nih.gov/pubmed/34368349 http://dx.doi.org/10.1155/2021/5516344 |
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