Cargando…
Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance
We present a method to generate synthetic thorax radiographs with realistic nodules from CT scans, and a perfect ground truth knowledge. We evaluated the detection performance of nine radiologists and two convolutional neural networks in a reader study. Nodules were artificially inserted into the lu...
Autores principales: | , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8339004/ https://www.ncbi.nlm.nih.gov/pubmed/34349135 http://dx.doi.org/10.1038/s41598-021-94750-z |
_version_ | 1783733506685272064 |
---|---|
author | Schultheiss, Manuel Schmette, Philipp Bodden, Jannis Aichele, Juliane Müller-Leisse, Christina Gassert, Felix G. Gassert, Florian T. Gawlitza, Joshua F. Hofmann, Felix C. Sasse, Daniel von Schacky, Claudio E. Ziegelmayer, Sebastian De Marco, Fabio Renger, Bernhard Makowski, Marcus R. Pfeiffer, Franz Pfeiffer, Daniela |
author_facet | Schultheiss, Manuel Schmette, Philipp Bodden, Jannis Aichele, Juliane Müller-Leisse, Christina Gassert, Felix G. Gassert, Florian T. Gawlitza, Joshua F. Hofmann, Felix C. Sasse, Daniel von Schacky, Claudio E. Ziegelmayer, Sebastian De Marco, Fabio Renger, Bernhard Makowski, Marcus R. Pfeiffer, Franz Pfeiffer, Daniela |
author_sort | Schultheiss, Manuel |
collection | PubMed |
description | We present a method to generate synthetic thorax radiographs with realistic nodules from CT scans, and a perfect ground truth knowledge. We evaluated the detection performance of nine radiologists and two convolutional neural networks in a reader study. Nodules were artificially inserted into the lung of a CT volume and synthetic radiographs were obtained by forward-projecting the volume. Hence, our framework allowed for a detailed evaluation of CAD systems’ and radiologists’ performance due to the availability of accurate ground-truth labels for nodules from synthetic data. Radiographs for network training (U-Net and RetinaNet) were generated from 855 CT scans of a public dataset. For the reader study, 201 radiographs were generated from 21 nodule-free CT scans with altering nodule positions, sizes and nodule counts of inserted nodules. Average true positive detections by nine radiologists were 248.8 nodules, 51.7 false positive predicted nodules and 121.2 false negative predicted nodules. The best performing CAD system achieved 268 true positives, 66 false positives and 102 false negatives. Corresponding weighted alternative free response operating characteristic figure-of-merits (wAFROC FOM) for the radiologists range from 0.54 to 0.87 compared to a value of 0.81 (CI 0.75–0.87) for the best performing CNN. The CNN did not perform significantly better against the combined average of the 9 readers (p = 0.49). Paramediastinal nodules accounted for most false positive and false negative detections by readers, which can be explained by the presence of more tissue in this area. |
format | Online Article Text |
id | pubmed-8339004 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-83390042021-08-05 Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance Schultheiss, Manuel Schmette, Philipp Bodden, Jannis Aichele, Juliane Müller-Leisse, Christina Gassert, Felix G. Gassert, Florian T. Gawlitza, Joshua F. Hofmann, Felix C. Sasse, Daniel von Schacky, Claudio E. Ziegelmayer, Sebastian De Marco, Fabio Renger, Bernhard Makowski, Marcus R. Pfeiffer, Franz Pfeiffer, Daniela Sci Rep Article We present a method to generate synthetic thorax radiographs with realistic nodules from CT scans, and a perfect ground truth knowledge. We evaluated the detection performance of nine radiologists and two convolutional neural networks in a reader study. Nodules were artificially inserted into the lung of a CT volume and synthetic radiographs were obtained by forward-projecting the volume. Hence, our framework allowed for a detailed evaluation of CAD systems’ and radiologists’ performance due to the availability of accurate ground-truth labels for nodules from synthetic data. Radiographs for network training (U-Net and RetinaNet) were generated from 855 CT scans of a public dataset. For the reader study, 201 radiographs were generated from 21 nodule-free CT scans with altering nodule positions, sizes and nodule counts of inserted nodules. Average true positive detections by nine radiologists were 248.8 nodules, 51.7 false positive predicted nodules and 121.2 false negative predicted nodules. The best performing CAD system achieved 268 true positives, 66 false positives and 102 false negatives. Corresponding weighted alternative free response operating characteristic figure-of-merits (wAFROC FOM) for the radiologists range from 0.54 to 0.87 compared to a value of 0.81 (CI 0.75–0.87) for the best performing CNN. The CNN did not perform significantly better against the combined average of the 9 readers (p = 0.49). Paramediastinal nodules accounted for most false positive and false negative detections by readers, which can be explained by the presence of more tissue in this area. Nature Publishing Group UK 2021-08-04 /pmc/articles/PMC8339004/ /pubmed/34349135 http://dx.doi.org/10.1038/s41598-021-94750-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Schultheiss, Manuel Schmette, Philipp Bodden, Jannis Aichele, Juliane Müller-Leisse, Christina Gassert, Felix G. Gassert, Florian T. Gawlitza, Joshua F. Hofmann, Felix C. Sasse, Daniel von Schacky, Claudio E. Ziegelmayer, Sebastian De Marco, Fabio Renger, Bernhard Makowski, Marcus R. Pfeiffer, Franz Pfeiffer, Daniela Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance |
title | Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance |
title_full | Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance |
title_fullStr | Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance |
title_full_unstemmed | Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance |
title_short | Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance |
title_sort | lung nodule detection in chest x-rays using synthetic ground-truth data comparing cnn-based diagnosis to human performance |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8339004/ https://www.ncbi.nlm.nih.gov/pubmed/34349135 http://dx.doi.org/10.1038/s41598-021-94750-z |
work_keys_str_mv | AT schultheissmanuel lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT schmettephilipp lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT boddenjannis lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT aichelejuliane lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT mullerleissechristina lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT gassertfelixg lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT gassertfloriant lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT gawlitzajoshuaf lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT hofmannfelixc lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT sassedaniel lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT vonschackyclaudioe lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT ziegelmayersebastian lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT demarcofabio lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT rengerbernhard lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT makowskimarcusr lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT pfeifferfranz lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance AT pfeifferdaniela lungnoduledetectioninchestxraysusingsyntheticgroundtruthdatacomparingcnnbaseddiagnosistohumanperformance |