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Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance

We present a method to generate synthetic thorax radiographs with realistic nodules from CT scans, and a perfect ground truth knowledge. We evaluated the detection performance of nine radiologists and two convolutional neural networks in a reader study. Nodules were artificially inserted into the lu...

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Autores principales: Schultheiss, Manuel, Schmette, Philipp, Bodden, Jannis, Aichele, Juliane, Müller-Leisse, Christina, Gassert, Felix G., Gassert, Florian T., Gawlitza, Joshua F., Hofmann, Felix C., Sasse, Daniel, von Schacky, Claudio E., Ziegelmayer, Sebastian, De Marco, Fabio, Renger, Bernhard, Makowski, Marcus R., Pfeiffer, Franz, Pfeiffer, Daniela
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8339004/
https://www.ncbi.nlm.nih.gov/pubmed/34349135
http://dx.doi.org/10.1038/s41598-021-94750-z
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author Schultheiss, Manuel
Schmette, Philipp
Bodden, Jannis
Aichele, Juliane
Müller-Leisse, Christina
Gassert, Felix G.
Gassert, Florian T.
Gawlitza, Joshua F.
Hofmann, Felix C.
Sasse, Daniel
von Schacky, Claudio E.
Ziegelmayer, Sebastian
De Marco, Fabio
Renger, Bernhard
Makowski, Marcus R.
Pfeiffer, Franz
Pfeiffer, Daniela
author_facet Schultheiss, Manuel
Schmette, Philipp
Bodden, Jannis
Aichele, Juliane
Müller-Leisse, Christina
Gassert, Felix G.
Gassert, Florian T.
Gawlitza, Joshua F.
Hofmann, Felix C.
Sasse, Daniel
von Schacky, Claudio E.
Ziegelmayer, Sebastian
De Marco, Fabio
Renger, Bernhard
Makowski, Marcus R.
Pfeiffer, Franz
Pfeiffer, Daniela
author_sort Schultheiss, Manuel
collection PubMed
description We present a method to generate synthetic thorax radiographs with realistic nodules from CT scans, and a perfect ground truth knowledge. We evaluated the detection performance of nine radiologists and two convolutional neural networks in a reader study. Nodules were artificially inserted into the lung of a CT volume and synthetic radiographs were obtained by forward-projecting the volume. Hence, our framework allowed for a detailed evaluation of CAD systems’ and radiologists’ performance due to the availability of accurate ground-truth labels for nodules from synthetic data. Radiographs for network training (U-Net and RetinaNet) were generated from 855 CT scans of a public dataset. For the reader study, 201 radiographs were generated from 21 nodule-free CT scans with altering nodule positions, sizes and nodule counts of inserted nodules. Average true positive detections by nine radiologists were 248.8 nodules, 51.7 false positive predicted nodules and 121.2 false negative predicted nodules. The best performing CAD system achieved 268 true positives, 66 false positives and 102 false negatives. Corresponding weighted alternative free response operating characteristic figure-of-merits (wAFROC FOM) for the radiologists range from 0.54 to 0.87 compared to a value of 0.81 (CI 0.75–0.87) for the best performing CNN. The CNN did not perform significantly better against the combined average of the 9 readers (p = 0.49). Paramediastinal nodules accounted for most false positive and false negative detections by readers, which can be explained by the presence of more tissue in this area.
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spelling pubmed-83390042021-08-05 Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance Schultheiss, Manuel Schmette, Philipp Bodden, Jannis Aichele, Juliane Müller-Leisse, Christina Gassert, Felix G. Gassert, Florian T. Gawlitza, Joshua F. Hofmann, Felix C. Sasse, Daniel von Schacky, Claudio E. Ziegelmayer, Sebastian De Marco, Fabio Renger, Bernhard Makowski, Marcus R. Pfeiffer, Franz Pfeiffer, Daniela Sci Rep Article We present a method to generate synthetic thorax radiographs with realistic nodules from CT scans, and a perfect ground truth knowledge. We evaluated the detection performance of nine radiologists and two convolutional neural networks in a reader study. Nodules were artificially inserted into the lung of a CT volume and synthetic radiographs were obtained by forward-projecting the volume. Hence, our framework allowed for a detailed evaluation of CAD systems’ and radiologists’ performance due to the availability of accurate ground-truth labels for nodules from synthetic data. Radiographs for network training (U-Net and RetinaNet) were generated from 855 CT scans of a public dataset. For the reader study, 201 radiographs were generated from 21 nodule-free CT scans with altering nodule positions, sizes and nodule counts of inserted nodules. Average true positive detections by nine radiologists were 248.8 nodules, 51.7 false positive predicted nodules and 121.2 false negative predicted nodules. The best performing CAD system achieved 268 true positives, 66 false positives and 102 false negatives. Corresponding weighted alternative free response operating characteristic figure-of-merits (wAFROC FOM) for the radiologists range from 0.54 to 0.87 compared to a value of 0.81 (CI 0.75–0.87) for the best performing CNN. The CNN did not perform significantly better against the combined average of the 9 readers (p = 0.49). Paramediastinal nodules accounted for most false positive and false negative detections by readers, which can be explained by the presence of more tissue in this area. Nature Publishing Group UK 2021-08-04 /pmc/articles/PMC8339004/ /pubmed/34349135 http://dx.doi.org/10.1038/s41598-021-94750-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Schultheiss, Manuel
Schmette, Philipp
Bodden, Jannis
Aichele, Juliane
Müller-Leisse, Christina
Gassert, Felix G.
Gassert, Florian T.
Gawlitza, Joshua F.
Hofmann, Felix C.
Sasse, Daniel
von Schacky, Claudio E.
Ziegelmayer, Sebastian
De Marco, Fabio
Renger, Bernhard
Makowski, Marcus R.
Pfeiffer, Franz
Pfeiffer, Daniela
Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance
title Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance
title_full Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance
title_fullStr Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance
title_full_unstemmed Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance
title_short Lung nodule detection in chest X-rays using synthetic ground-truth data comparing CNN-based diagnosis to human performance
title_sort lung nodule detection in chest x-rays using synthetic ground-truth data comparing cnn-based diagnosis to human performance
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8339004/
https://www.ncbi.nlm.nih.gov/pubmed/34349135
http://dx.doi.org/10.1038/s41598-021-94750-z
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