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Deciphering key genes in cardio-renal syndrome using network analysis

Cardio-renal syndrome (CRS) is a rapidly recognized clinical entity which refers to the inextricably connection between heart and renal impairment, whereby abnormality to one organ directly promotes deterioration of the other one. Biological markers help to gain insight into the pathological process...

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Autores principales: Ahmed, Mohd Murshad, Tazyeen, Safia, Alam, Aftab, Farooqui, Anam, Ali, Rafat, Imam, Nikhat, Tamkeen, Naaila, Ali, Shahnawaz, Malik, Md Zubbair, Ishrat, Romana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8340714/
https://www.ncbi.nlm.nih.gov/pubmed/34393423
http://dx.doi.org/10.6026/97320630017086
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author Ahmed, Mohd Murshad
Tazyeen, Safia
Alam, Aftab
Farooqui, Anam
Ali, Rafat
Imam, Nikhat
Tamkeen, Naaila
Ali, Shahnawaz
Malik, Md Zubbair
Ishrat, Romana
author_facet Ahmed, Mohd Murshad
Tazyeen, Safia
Alam, Aftab
Farooqui, Anam
Ali, Rafat
Imam, Nikhat
Tamkeen, Naaila
Ali, Shahnawaz
Malik, Md Zubbair
Ishrat, Romana
author_sort Ahmed, Mohd Murshad
collection PubMed
description Cardio-renal syndrome (CRS) is a rapidly recognized clinical entity which refers to the inextricably connection between heart and renal impairment, whereby abnormality to one organ directly promotes deterioration of the other one. Biological markers help to gain insight into the pathological processes for early diagnosis with higher accuracy of CRS using known clinical findings. Therefore, it is of interest to identify target genes in associated pathways implicated linked to CRS. Hence, 119 CRS genes were extracted from the literature to construct the PPIN network. We used the MCODE tool to generate modules from network so as to select the top 10 modules from 23 available modules. The modules were further analyzed to identify 12 essential genes in the network. These biomarkers are potential emerging tools for understanding the pathophysiologic mechanisms for the early diagnosis of CRS. Ontological analysis shows that they are rich in MF protease binding and endo-peptidase inhibitor activity. Thus, this data help increase our knowledge on CRS to improve clinical management of the disease.
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spelling pubmed-83407142021-08-12 Deciphering key genes in cardio-renal syndrome using network analysis Ahmed, Mohd Murshad Tazyeen, Safia Alam, Aftab Farooqui, Anam Ali, Rafat Imam, Nikhat Tamkeen, Naaila Ali, Shahnawaz Malik, Md Zubbair Ishrat, Romana Bioinformation Research Article Cardio-renal syndrome (CRS) is a rapidly recognized clinical entity which refers to the inextricably connection between heart and renal impairment, whereby abnormality to one organ directly promotes deterioration of the other one. Biological markers help to gain insight into the pathological processes for early diagnosis with higher accuracy of CRS using known clinical findings. Therefore, it is of interest to identify target genes in associated pathways implicated linked to CRS. Hence, 119 CRS genes were extracted from the literature to construct the PPIN network. We used the MCODE tool to generate modules from network so as to select the top 10 modules from 23 available modules. The modules were further analyzed to identify 12 essential genes in the network. These biomarkers are potential emerging tools for understanding the pathophysiologic mechanisms for the early diagnosis of CRS. Ontological analysis shows that they are rich in MF protease binding and endo-peptidase inhibitor activity. Thus, this data help increase our knowledge on CRS to improve clinical management of the disease. Biomedical Informatics 2021-01-31 /pmc/articles/PMC8340714/ /pubmed/34393423 http://dx.doi.org/10.6026/97320630017086 Text en © 2021 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Research Article
Ahmed, Mohd Murshad
Tazyeen, Safia
Alam, Aftab
Farooqui, Anam
Ali, Rafat
Imam, Nikhat
Tamkeen, Naaila
Ali, Shahnawaz
Malik, Md Zubbair
Ishrat, Romana
Deciphering key genes in cardio-renal syndrome using network analysis
title Deciphering key genes in cardio-renal syndrome using network analysis
title_full Deciphering key genes in cardio-renal syndrome using network analysis
title_fullStr Deciphering key genes in cardio-renal syndrome using network analysis
title_full_unstemmed Deciphering key genes in cardio-renal syndrome using network analysis
title_short Deciphering key genes in cardio-renal syndrome using network analysis
title_sort deciphering key genes in cardio-renal syndrome using network analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8340714/
https://www.ncbi.nlm.nih.gov/pubmed/34393423
http://dx.doi.org/10.6026/97320630017086
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