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CONSULT: accurate contamination removal using locality-sensitive hashing

A fundamental question appears in many bioinformatics applications: Does a sequencing read belong to a large dataset of genomes from some broad taxonomic group, even when the closest match in the set is evolutionarily divergent from the query? For example, low-coverage genome sequencing (skimming) p...

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Detalles Bibliográficos
Autores principales: Rachtman, Eleonora, Bafna, Vineet, Mirarab, Siavash
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8340999/
https://www.ncbi.nlm.nih.gov/pubmed/34377979
http://dx.doi.org/10.1093/nargab/lqab071