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OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding

The molecular mechanisms of olfaction, or the sense of smell, are relatively underexplored compared with other sensory systems, primarily because of its underlying molecular complexity and the limited availability of dedicated predictive computational tools. Odorant receptors (ORs) allow the detecti...

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Autores principales: Gupta, Ria, Mittal, Aayushi, Agrawal, Vishesh, Gupta, Sushant, Gupta, Krishan, Jain, Rishi Raj, Garg, Prakriti, Mohanty, Sanjay Kumar, Sogani, Riya, Chhabra, Harshit Singh, Gautam, Vishakha, Mishra, Tripti, Sengupta, Debarka, Ahuja, Gaurav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Biochemistry and Molecular Biology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8342790/
https://www.ncbi.nlm.nih.gov/pubmed/34265305
http://dx.doi.org/10.1016/j.jbc.2021.100956
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author Gupta, Ria
Mittal, Aayushi
Agrawal, Vishesh
Gupta, Sushant
Gupta, Krishan
Jain, Rishi Raj
Garg, Prakriti
Mohanty, Sanjay Kumar
Sogani, Riya
Chhabra, Harshit Singh
Gautam, Vishakha
Mishra, Tripti
Sengupta, Debarka
Ahuja, Gaurav
author_facet Gupta, Ria
Mittal, Aayushi
Agrawal, Vishesh
Gupta, Sushant
Gupta, Krishan
Jain, Rishi Raj
Garg, Prakriti
Mohanty, Sanjay Kumar
Sogani, Riya
Chhabra, Harshit Singh
Gautam, Vishakha
Mishra, Tripti
Sengupta, Debarka
Ahuja, Gaurav
author_sort Gupta, Ria
collection PubMed
description The molecular mechanisms of olfaction, or the sense of smell, are relatively underexplored compared with other sensory systems, primarily because of its underlying molecular complexity and the limited availability of dedicated predictive computational tools. Odorant receptors (ORs) allow the detection and discrimination of a myriad of odorant molecules and therefore mediate the first step of the olfactory signaling cascade. To date, odorant (or agonist) information for the majority of these receptors is still unknown, limiting our understanding of their functional relevance in odor-induced behavioral responses. In this study, we introduce OdoriFy, a Web server featuring powerful deep neural network–based prediction engines. OdoriFy enables (1) identification of odorant molecules for wildtype or mutant human ORs (Odor Finder); (2) classification of user-provided chemicals as odorants/nonodorants (Odorant Predictor); (3) identification of responsive ORs for a query odorant (OR Finder); and (4) interaction validation using Odorant–OR Pair Analysis. In addition, OdoriFy provides the rationale behind every prediction it makes by leveraging explainable artificial intelligence. This module highlights the basis of the prediction of odorants/nonodorants at atomic resolution and for the ORs at amino acid levels. A key distinguishing feature of OdoriFy is that it is built on a comprehensive repertoire of manually curated information of human ORs with their known agonists and nonagonists, making it a highly interactive and resource-enriched Web server. Moreover, comparative analysis of OdoriFy predictions with an alternative structure-based ligand interaction method revealed comparable results. OdoriFy is available freely as a web service at https://odorify.ahujalab.iiitd.edu.in/olfy/.
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spelling pubmed-83427902021-08-11 OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding Gupta, Ria Mittal, Aayushi Agrawal, Vishesh Gupta, Sushant Gupta, Krishan Jain, Rishi Raj Garg, Prakriti Mohanty, Sanjay Kumar Sogani, Riya Chhabra, Harshit Singh Gautam, Vishakha Mishra, Tripti Sengupta, Debarka Ahuja, Gaurav J Biol Chem Research Article The molecular mechanisms of olfaction, or the sense of smell, are relatively underexplored compared with other sensory systems, primarily because of its underlying molecular complexity and the limited availability of dedicated predictive computational tools. Odorant receptors (ORs) allow the detection and discrimination of a myriad of odorant molecules and therefore mediate the first step of the olfactory signaling cascade. To date, odorant (or agonist) information for the majority of these receptors is still unknown, limiting our understanding of their functional relevance in odor-induced behavioral responses. In this study, we introduce OdoriFy, a Web server featuring powerful deep neural network–based prediction engines. OdoriFy enables (1) identification of odorant molecules for wildtype or mutant human ORs (Odor Finder); (2) classification of user-provided chemicals as odorants/nonodorants (Odorant Predictor); (3) identification of responsive ORs for a query odorant (OR Finder); and (4) interaction validation using Odorant–OR Pair Analysis. In addition, OdoriFy provides the rationale behind every prediction it makes by leveraging explainable artificial intelligence. This module highlights the basis of the prediction of odorants/nonodorants at atomic resolution and for the ORs at amino acid levels. A key distinguishing feature of OdoriFy is that it is built on a comprehensive repertoire of manually curated information of human ORs with their known agonists and nonagonists, making it a highly interactive and resource-enriched Web server. Moreover, comparative analysis of OdoriFy predictions with an alternative structure-based ligand interaction method revealed comparable results. OdoriFy is available freely as a web service at https://odorify.ahujalab.iiitd.edu.in/olfy/. American Society for Biochemistry and Molecular Biology 2021-07-12 /pmc/articles/PMC8342790/ /pubmed/34265305 http://dx.doi.org/10.1016/j.jbc.2021.100956 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Gupta, Ria
Mittal, Aayushi
Agrawal, Vishesh
Gupta, Sushant
Gupta, Krishan
Jain, Rishi Raj
Garg, Prakriti
Mohanty, Sanjay Kumar
Sogani, Riya
Chhabra, Harshit Singh
Gautam, Vishakha
Mishra, Tripti
Sengupta, Debarka
Ahuja, Gaurav
OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding
title OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding
title_full OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding
title_fullStr OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding
title_full_unstemmed OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding
title_short OdoriFy: A conglomerate of artificial intelligence–driven prediction engines for olfactory decoding
title_sort odorify: a conglomerate of artificial intelligence–driven prediction engines for olfactory decoding
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8342790/
https://www.ncbi.nlm.nih.gov/pubmed/34265305
http://dx.doi.org/10.1016/j.jbc.2021.100956
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