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Comparative Bioinformatics Characteristic of Bladder Cancer Stage 2 from Stage 4 Expression Profile: A Network-Based Study

BACKGROUND: Bladder cancer (BC) has remained as one of the most challenging issues in medicine. The aim of this study was to investigate the differential network analysis of stages 2 and 4 of BC to better understand the molecular pathology of these states. MATERIALS AND METHODS: We chose gene expres...

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Autores principales: Zamanian Azodi, Mona, Rezaei Tavirani, Mostafa, Rostami-Nejad, Mohammad, Rezaei-Tavirani, Majid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Salvia Medical Sciences Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8343782/
https://www.ncbi.nlm.nih.gov/pubmed/34466446
http://dx.doi.org/10.22086/gmj.v0i0.1279
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author Zamanian Azodi, Mona
Rezaei Tavirani, Mostafa
Rostami-Nejad, Mohammad
Rezaei-Tavirani, Majid
author_facet Zamanian Azodi, Mona
Rezaei Tavirani, Mostafa
Rostami-Nejad, Mohammad
Rezaei-Tavirani, Majid
author_sort Zamanian Azodi, Mona
collection PubMed
description BACKGROUND: Bladder cancer (BC) has remained as one of the most challenging issues in medicine. The aim of this study was to investigate the differential network analysis of stages 2 and 4 of BC to better understand the molecular pathology of these states. MATERIALS AND METHODS: We chose gene expression data of GSE52519 from Gene Expression Omnibus (GEO) database analyzed by the GEO2R online tool. Cytoscape version 3.6.1 and its algorithms are the methods applied for the network construction and investigation of differentially expressed genes (DEG) in these states. RESULT: Our result revealed that the analysis DEGs provides useful information about a common molecular feature of stages 2 and 4 of BC. CONCLUSION: Consequently, the network finding revealed that more investigation about stage 2 is required to achieve an effective therapeutic protocol to block the transition from stage 2 to stage 4.
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spelling pubmed-83437822021-08-30 Comparative Bioinformatics Characteristic of Bladder Cancer Stage 2 from Stage 4 Expression Profile: A Network-Based Study Zamanian Azodi, Mona Rezaei Tavirani, Mostafa Rostami-Nejad, Mohammad Rezaei-Tavirani, Majid Galen Med J Original Article BACKGROUND: Bladder cancer (BC) has remained as one of the most challenging issues in medicine. The aim of this study was to investigate the differential network analysis of stages 2 and 4 of BC to better understand the molecular pathology of these states. MATERIALS AND METHODS: We chose gene expression data of GSE52519 from Gene Expression Omnibus (GEO) database analyzed by the GEO2R online tool. Cytoscape version 3.6.1 and its algorithms are the methods applied for the network construction and investigation of differentially expressed genes (DEG) in these states. RESULT: Our result revealed that the analysis DEGs provides useful information about a common molecular feature of stages 2 and 4 of BC. CONCLUSION: Consequently, the network finding revealed that more investigation about stage 2 is required to achieve an effective therapeutic protocol to block the transition from stage 2 to stage 4. Salvia Medical Sciences Ltd 2018-12-17 /pmc/articles/PMC8343782/ /pubmed/34466446 http://dx.doi.org/10.22086/gmj.v0i0.1279 Text en Copyright© 2018, Galen Medical Journal. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) )
spellingShingle Original Article
Zamanian Azodi, Mona
Rezaei Tavirani, Mostafa
Rostami-Nejad, Mohammad
Rezaei-Tavirani, Majid
Comparative Bioinformatics Characteristic of Bladder Cancer Stage 2 from Stage 4 Expression Profile: A Network-Based Study
title Comparative Bioinformatics Characteristic of Bladder Cancer Stage 2 from Stage 4 Expression Profile: A Network-Based Study
title_full Comparative Bioinformatics Characteristic of Bladder Cancer Stage 2 from Stage 4 Expression Profile: A Network-Based Study
title_fullStr Comparative Bioinformatics Characteristic of Bladder Cancer Stage 2 from Stage 4 Expression Profile: A Network-Based Study
title_full_unstemmed Comparative Bioinformatics Characteristic of Bladder Cancer Stage 2 from Stage 4 Expression Profile: A Network-Based Study
title_short Comparative Bioinformatics Characteristic of Bladder Cancer Stage 2 from Stage 4 Expression Profile: A Network-Based Study
title_sort comparative bioinformatics characteristic of bladder cancer stage 2 from stage 4 expression profile: a network-based study
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8343782/
https://www.ncbi.nlm.nih.gov/pubmed/34466446
http://dx.doi.org/10.22086/gmj.v0i0.1279
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