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Automated Segmentation of the Human Abdominal Vascular System Using a Hybrid Approach Combining Expert System and Supervised Deep Learning

Background: Computed tomography angiography (CTA) is one of the most commonly used imaging technique for the management of vascular diseases. Here, we aimed to develop a hybrid method combining a feature-based expert system with a supervised deep learning (DL) algorithm to enable a fully automatic s...

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Autores principales: Lareyre, Fabien, Adam, Cédric, Carrier, Marion, Raffort, Juliette
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8347188/
https://www.ncbi.nlm.nih.gov/pubmed/34362129
http://dx.doi.org/10.3390/jcm10153347
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author Lareyre, Fabien
Adam, Cédric
Carrier, Marion
Raffort, Juliette
author_facet Lareyre, Fabien
Adam, Cédric
Carrier, Marion
Raffort, Juliette
author_sort Lareyre, Fabien
collection PubMed
description Background: Computed tomography angiography (CTA) is one of the most commonly used imaging technique for the management of vascular diseases. Here, we aimed to develop a hybrid method combining a feature-based expert system with a supervised deep learning (DL) algorithm to enable a fully automatic segmentation of the abdominal vascular tree. Methods: We proposed an algorithm based on the hybridization of a data-driven convolutional neural network and a knowledge-based model dedicated to vascular system segmentation. By using two distinct datasets of CTA from patients to evaluate independence to training dataset, the accuracy of the hybrid method for lumen and thrombus segmentation was evaluated compared to the feature-based expert system alone and to the ground truth provided by a human expert. Results: The hybrid approach demonstrated a better accuracy for lumen segmentation compared to the expert system alone (volume similarity: 0.8128 vs. 0.7912, p = 0.0006 and Dice similarity coefficient: 0.8266 vs. 0.7942, p < 0.0001). The accuracy for thrombus segmentation was also enhanced using the hybrid approach (volume similarity: 0.9404 vs. 0.9185, p = 0.0027 and Dice similarity coefficient: 0.8918 vs. 0.8654, p < 0.0001). Conclusions: By enabling a robust and fully automatic segmentation, the method could be used to develop real-time decision support to help in the management of vascular diseases.
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spelling pubmed-83471882021-08-08 Automated Segmentation of the Human Abdominal Vascular System Using a Hybrid Approach Combining Expert System and Supervised Deep Learning Lareyre, Fabien Adam, Cédric Carrier, Marion Raffort, Juliette J Clin Med Article Background: Computed tomography angiography (CTA) is one of the most commonly used imaging technique for the management of vascular diseases. Here, we aimed to develop a hybrid method combining a feature-based expert system with a supervised deep learning (DL) algorithm to enable a fully automatic segmentation of the abdominal vascular tree. Methods: We proposed an algorithm based on the hybridization of a data-driven convolutional neural network and a knowledge-based model dedicated to vascular system segmentation. By using two distinct datasets of CTA from patients to evaluate independence to training dataset, the accuracy of the hybrid method for lumen and thrombus segmentation was evaluated compared to the feature-based expert system alone and to the ground truth provided by a human expert. Results: The hybrid approach demonstrated a better accuracy for lumen segmentation compared to the expert system alone (volume similarity: 0.8128 vs. 0.7912, p = 0.0006 and Dice similarity coefficient: 0.8266 vs. 0.7942, p < 0.0001). The accuracy for thrombus segmentation was also enhanced using the hybrid approach (volume similarity: 0.9404 vs. 0.9185, p = 0.0027 and Dice similarity coefficient: 0.8918 vs. 0.8654, p < 0.0001). Conclusions: By enabling a robust and fully automatic segmentation, the method could be used to develop real-time decision support to help in the management of vascular diseases. MDPI 2021-07-29 /pmc/articles/PMC8347188/ /pubmed/34362129 http://dx.doi.org/10.3390/jcm10153347 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lareyre, Fabien
Adam, Cédric
Carrier, Marion
Raffort, Juliette
Automated Segmentation of the Human Abdominal Vascular System Using a Hybrid Approach Combining Expert System and Supervised Deep Learning
title Automated Segmentation of the Human Abdominal Vascular System Using a Hybrid Approach Combining Expert System and Supervised Deep Learning
title_full Automated Segmentation of the Human Abdominal Vascular System Using a Hybrid Approach Combining Expert System and Supervised Deep Learning
title_fullStr Automated Segmentation of the Human Abdominal Vascular System Using a Hybrid Approach Combining Expert System and Supervised Deep Learning
title_full_unstemmed Automated Segmentation of the Human Abdominal Vascular System Using a Hybrid Approach Combining Expert System and Supervised Deep Learning
title_short Automated Segmentation of the Human Abdominal Vascular System Using a Hybrid Approach Combining Expert System and Supervised Deep Learning
title_sort automated segmentation of the human abdominal vascular system using a hybrid approach combining expert system and supervised deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8347188/
https://www.ncbi.nlm.nih.gov/pubmed/34362129
http://dx.doi.org/10.3390/jcm10153347
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