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Non-Covalent Forces in Naphthazarin—Cooperativity or Competition in the Light of Theoretical Approaches

Non-covalent interactions responsible for molecular features and self-assembly in Naphthazarin C polymorph were investigated on the basis of diverse theoretical approaches: Density Functional Theory (DFT), Diffusion Quantum Monte Carlo (DQMC), Symmetry-Adapted Perturbation Theory (SAPT) and Car-Parr...

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Autores principales: Jezierska, Aneta, Błaziak, Kacper, Klahm, Sebastian, Lüchow, Arne, Panek, Jarosław J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8348774/
https://www.ncbi.nlm.nih.gov/pubmed/34360798
http://dx.doi.org/10.3390/ijms22158033
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author Jezierska, Aneta
Błaziak, Kacper
Klahm, Sebastian
Lüchow, Arne
Panek, Jarosław J.
author_facet Jezierska, Aneta
Błaziak, Kacper
Klahm, Sebastian
Lüchow, Arne
Panek, Jarosław J.
author_sort Jezierska, Aneta
collection PubMed
description Non-covalent interactions responsible for molecular features and self-assembly in Naphthazarin C polymorph were investigated on the basis of diverse theoretical approaches: Density Functional Theory (DFT), Diffusion Quantum Monte Carlo (DQMC), Symmetry-Adapted Perturbation Theory (SAPT) and Car-Parrinello Molecular Dynamics (CPMD). The proton reaction paths in the intramolecular hydrogen bridges were studied. Two potential energy minima were found indicating that the proton transfer phenomena occur in the electronic ground state. Diffusion Quantum Monte Carlo (DQMC) and other levels of theory including Coupled Cluster (CC) employment enabled an accurate inspection of Potential Energy Surface (PES) and revealed the energy barrier for the proton transfer. The structure and reactivity evolution associated with the proton transfer were investigated using Harmonic Oscillator Model of Aromaticity - HOMA index, Fukui functions and Atoms In Molecules (AIM) theory. The energy partitioning in the studied dimers was carried out based on Symmetry-Adapted Perturbation Theory (SAPT) indicating that dispersive forces are dominant in the structure stabilization. The CPMD simulations were performed at 60 K and 300 K in vacuo and in the crystalline phase. The temperature influence on the bridged protons dynamics was studied and showed that the proton transfer phenomena were not observed at 60 K, but the frequent events were noticed at 300 K in both studied phases. The spectroscopic signatures derived from the CPMD were computed using Fourier transformation of autocorrelation function of atomic velocity for the whole molecule and bridged protons. The computed gas-phase IR spectra showed two regions with OH absorption that covers frequencies from 2500 cm [Formula: see text] to 2800 cm [Formula: see text] at 60 K and from 2350 cm [Formula: see text] to 3250 cm [Formula: see text] at 300 K for both bridged protons. In comparison, the solid state computed IR spectra revealed the environmental influence on the vibrational features. For each of them absorption regions were found between 2700–3100 cm [Formula: see text] and 2400–2850 cm [Formula: see text] at 60 K and 2300–3300 cm [Formula: see text] and 2300–3200 cm [Formula: see text] at 300 K respectively. Therefore, the CPMD study results indicated that there is a cooperation of intramolecular hydrogen bonds in Naphthazarin molecule.
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spelling pubmed-83487742021-08-08 Non-Covalent Forces in Naphthazarin—Cooperativity or Competition in the Light of Theoretical Approaches Jezierska, Aneta Błaziak, Kacper Klahm, Sebastian Lüchow, Arne Panek, Jarosław J. Int J Mol Sci Article Non-covalent interactions responsible for molecular features and self-assembly in Naphthazarin C polymorph were investigated on the basis of diverse theoretical approaches: Density Functional Theory (DFT), Diffusion Quantum Monte Carlo (DQMC), Symmetry-Adapted Perturbation Theory (SAPT) and Car-Parrinello Molecular Dynamics (CPMD). The proton reaction paths in the intramolecular hydrogen bridges were studied. Two potential energy minima were found indicating that the proton transfer phenomena occur in the electronic ground state. Diffusion Quantum Monte Carlo (DQMC) and other levels of theory including Coupled Cluster (CC) employment enabled an accurate inspection of Potential Energy Surface (PES) and revealed the energy barrier for the proton transfer. The structure and reactivity evolution associated with the proton transfer were investigated using Harmonic Oscillator Model of Aromaticity - HOMA index, Fukui functions and Atoms In Molecules (AIM) theory. The energy partitioning in the studied dimers was carried out based on Symmetry-Adapted Perturbation Theory (SAPT) indicating that dispersive forces are dominant in the structure stabilization. The CPMD simulations were performed at 60 K and 300 K in vacuo and in the crystalline phase. The temperature influence on the bridged protons dynamics was studied and showed that the proton transfer phenomena were not observed at 60 K, but the frequent events were noticed at 300 K in both studied phases. The spectroscopic signatures derived from the CPMD were computed using Fourier transformation of autocorrelation function of atomic velocity for the whole molecule and bridged protons. The computed gas-phase IR spectra showed two regions with OH absorption that covers frequencies from 2500 cm [Formula: see text] to 2800 cm [Formula: see text] at 60 K and from 2350 cm [Formula: see text] to 3250 cm [Formula: see text] at 300 K for both bridged protons. In comparison, the solid state computed IR spectra revealed the environmental influence on the vibrational features. For each of them absorption regions were found between 2700–3100 cm [Formula: see text] and 2400–2850 cm [Formula: see text] at 60 K and 2300–3300 cm [Formula: see text] and 2300–3200 cm [Formula: see text] at 300 K respectively. Therefore, the CPMD study results indicated that there is a cooperation of intramolecular hydrogen bonds in Naphthazarin molecule. MDPI 2021-07-27 /pmc/articles/PMC8348774/ /pubmed/34360798 http://dx.doi.org/10.3390/ijms22158033 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Jezierska, Aneta
Błaziak, Kacper
Klahm, Sebastian
Lüchow, Arne
Panek, Jarosław J.
Non-Covalent Forces in Naphthazarin—Cooperativity or Competition in the Light of Theoretical Approaches
title Non-Covalent Forces in Naphthazarin—Cooperativity or Competition in the Light of Theoretical Approaches
title_full Non-Covalent Forces in Naphthazarin—Cooperativity or Competition in the Light of Theoretical Approaches
title_fullStr Non-Covalent Forces in Naphthazarin—Cooperativity or Competition in the Light of Theoretical Approaches
title_full_unstemmed Non-Covalent Forces in Naphthazarin—Cooperativity or Competition in the Light of Theoretical Approaches
title_short Non-Covalent Forces in Naphthazarin—Cooperativity or Competition in the Light of Theoretical Approaches
title_sort non-covalent forces in naphthazarin—cooperativity or competition in the light of theoretical approaches
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8348774/
https://www.ncbi.nlm.nih.gov/pubmed/34360798
http://dx.doi.org/10.3390/ijms22158033
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