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Multi-label segmentation and detection of COVID-19 abnormalities from chest radiographs using deep learning

Due to COVID-19, demand for Chest Radiographs (CXRs) have increased exponentially. Therefore, we present a novel fully automatic modified Attention U-Net (CXAU-Net) multi-class segmentation deep model that can detect common findings of COVID-19 in CXR images. The architectural design of this model i...

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Autores principales: Arora, Ruchika, Saini, Indu, Sood, Neetu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier GmbH. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8349421/
https://www.ncbi.nlm.nih.gov/pubmed/34393275
http://dx.doi.org/10.1016/j.ijleo.2021.167780
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author Arora, Ruchika
Saini, Indu
Sood, Neetu
author_facet Arora, Ruchika
Saini, Indu
Sood, Neetu
author_sort Arora, Ruchika
collection PubMed
description Due to COVID-19, demand for Chest Radiographs (CXRs) have increased exponentially. Therefore, we present a novel fully automatic modified Attention U-Net (CXAU-Net) multi-class segmentation deep model that can detect common findings of COVID-19 in CXR images. The architectural design of this model includes three novelties: first, an Attention U-net model with channel and spatial attention blocks is designed that precisely localize multiple pathologies; second, dilated convolution applied improves the sensitivity of the model to foreground pixels with additional receptive fields valuation, and third a newly proposed hybrid loss function combines both area and size information for optimizing model. The proposed model achieves average accuracy, DSC, and Jaccard index scores of 0.951, 0.993, 0.984, and 0.921, 0.985, 0.973 for image-based and patch-based approaches respectively for multi-class segmentation on Chest X-ray 14 dataset. Also, average DSC and Jaccard index scores of 0.998, 0.989 are achieved for binary-class segmentation on the Japanese Society of Radiological Technology (JSRT) CXR dataset. These results illustrate that the proposed model outperformed the state-of-the-art segmentation methods.
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spelling pubmed-83494212021-08-09 Multi-label segmentation and detection of COVID-19 abnormalities from chest radiographs using deep learning Arora, Ruchika Saini, Indu Sood, Neetu Optik (Stuttg) Article Due to COVID-19, demand for Chest Radiographs (CXRs) have increased exponentially. Therefore, we present a novel fully automatic modified Attention U-Net (CXAU-Net) multi-class segmentation deep model that can detect common findings of COVID-19 in CXR images. The architectural design of this model includes three novelties: first, an Attention U-net model with channel and spatial attention blocks is designed that precisely localize multiple pathologies; second, dilated convolution applied improves the sensitivity of the model to foreground pixels with additional receptive fields valuation, and third a newly proposed hybrid loss function combines both area and size information for optimizing model. The proposed model achieves average accuracy, DSC, and Jaccard index scores of 0.951, 0.993, 0.984, and 0.921, 0.985, 0.973 for image-based and patch-based approaches respectively for multi-class segmentation on Chest X-ray 14 dataset. Also, average DSC and Jaccard index scores of 0.998, 0.989 are achieved for binary-class segmentation on the Japanese Society of Radiological Technology (JSRT) CXR dataset. These results illustrate that the proposed model outperformed the state-of-the-art segmentation methods. Elsevier GmbH. 2021-11 2021-08-08 /pmc/articles/PMC8349421/ /pubmed/34393275 http://dx.doi.org/10.1016/j.ijleo.2021.167780 Text en © 2021 Elsevier GmbH. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Arora, Ruchika
Saini, Indu
Sood, Neetu
Multi-label segmentation and detection of COVID-19 abnormalities from chest radiographs using deep learning
title Multi-label segmentation and detection of COVID-19 abnormalities from chest radiographs using deep learning
title_full Multi-label segmentation and detection of COVID-19 abnormalities from chest radiographs using deep learning
title_fullStr Multi-label segmentation and detection of COVID-19 abnormalities from chest radiographs using deep learning
title_full_unstemmed Multi-label segmentation and detection of COVID-19 abnormalities from chest radiographs using deep learning
title_short Multi-label segmentation and detection of COVID-19 abnormalities from chest radiographs using deep learning
title_sort multi-label segmentation and detection of covid-19 abnormalities from chest radiographs using deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8349421/
https://www.ncbi.nlm.nih.gov/pubmed/34393275
http://dx.doi.org/10.1016/j.ijleo.2021.167780
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