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Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery
BACKGROUND: The widespread use of low-dose chest CT screening has improved the detection of early lung adenocarcinoma. Radical surgery is the best treatment strategy for patients with early lung adenocarcinoma; however, some patients present with postoperative recurrence and poor prognosis. Through...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8349519/ https://www.ncbi.nlm.nih.gov/pubmed/34430085 http://dx.doi.org/10.7717/peerj.11923 |
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author | Han, Peng Yue, Jiaqi Kong, Kangle Hu, Shan Cao, Peng Deng, Yu Li, Fan Zhao, Bo |
author_facet | Han, Peng Yue, Jiaqi Kong, Kangle Hu, Shan Cao, Peng Deng, Yu Li, Fan Zhao, Bo |
author_sort | Han, Peng |
collection | PubMed |
description | BACKGROUND: The widespread use of low-dose chest CT screening has improved the detection of early lung adenocarcinoma. Radical surgery is the best treatment strategy for patients with early lung adenocarcinoma; however, some patients present with postoperative recurrence and poor prognosis. Through this study, we hope to establish a model that can identify patients that are prone to recurrence and have poor prognosis after surgery for early lung adenocarcinoma. MATERIALS AND METHODS: We screened prognostic and relapse-related genes using The Cancer Genome Atlas (TCGA) database and the GSE50081 dataset from the Gene Expression Omnibus (GEO) database. The GSE30219 dataset was used to further screen target genes and construct a risk prognosis signature. Time-dependent ROC analysis, calibration degree analysis, and DCA were used to evaluate the reliability of the model. We validated the TCGA dataset, GSE50081, and GSE30219 internally. External validation was conducted in the GSE31210 dataset. RESULTS: A novel four-gene signature (INPP5B, FOSL2, CDCA3, RASAL2) was established to predict relapse-related survival outcomes in patients with early lung adenocarcinoma after surgery. The discovery of these genes may reveal the molecular mechanism of recurrence and poor prognosis of early lung adenocarcinoma. In addition, ROC analysis, calibration analysis and DCA were used to verify the genetic signature internally and externally. Our results showed that our gene signature had a good predictive ability for recurrence and prognosis. CONCLUSIONS: We established a four-gene signature and predictive model to predict the recurrence and corresponding survival rates in patients with early lung adenocarcinoma after surgery. These may be helpful for reforumulating post-operative consolidation treatment strategies. |
format | Online Article Text |
id | pubmed-8349519 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83495192021-08-23 Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery Han, Peng Yue, Jiaqi Kong, Kangle Hu, Shan Cao, Peng Deng, Yu Li, Fan Zhao, Bo PeerJ Bioinformatics BACKGROUND: The widespread use of low-dose chest CT screening has improved the detection of early lung adenocarcinoma. Radical surgery is the best treatment strategy for patients with early lung adenocarcinoma; however, some patients present with postoperative recurrence and poor prognosis. Through this study, we hope to establish a model that can identify patients that are prone to recurrence and have poor prognosis after surgery for early lung adenocarcinoma. MATERIALS AND METHODS: We screened prognostic and relapse-related genes using The Cancer Genome Atlas (TCGA) database and the GSE50081 dataset from the Gene Expression Omnibus (GEO) database. The GSE30219 dataset was used to further screen target genes and construct a risk prognosis signature. Time-dependent ROC analysis, calibration degree analysis, and DCA were used to evaluate the reliability of the model. We validated the TCGA dataset, GSE50081, and GSE30219 internally. External validation was conducted in the GSE31210 dataset. RESULTS: A novel four-gene signature (INPP5B, FOSL2, CDCA3, RASAL2) was established to predict relapse-related survival outcomes in patients with early lung adenocarcinoma after surgery. The discovery of these genes may reveal the molecular mechanism of recurrence and poor prognosis of early lung adenocarcinoma. In addition, ROC analysis, calibration analysis and DCA were used to verify the genetic signature internally and externally. Our results showed that our gene signature had a good predictive ability for recurrence and prognosis. CONCLUSIONS: We established a four-gene signature and predictive model to predict the recurrence and corresponding survival rates in patients with early lung adenocarcinoma after surgery. These may be helpful for reforumulating post-operative consolidation treatment strategies. PeerJ Inc. 2021-08-05 /pmc/articles/PMC8349519/ /pubmed/34430085 http://dx.doi.org/10.7717/peerj.11923 Text en ©2021 Han et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Han, Peng Yue, Jiaqi Kong, Kangle Hu, Shan Cao, Peng Deng, Yu Li, Fan Zhao, Bo Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery |
title | Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery |
title_full | Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery |
title_fullStr | Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery |
title_full_unstemmed | Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery |
title_short | Signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery |
title_sort | signature identification of relapse-related overall survival of early lung adenocarcinoma after radical surgery |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8349519/ https://www.ncbi.nlm.nih.gov/pubmed/34430085 http://dx.doi.org/10.7717/peerj.11923 |
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