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Search for Global Minimum Structures of [Formula: see text] (n = 1–15) Using xTB-Based Basin-Hopping Algorithm
A new program for searching global minimum structures of atomic clusters using basin-hopping algorithm based on the xTB method was developed here. The program can be performed with a much higher speed than its replacement directly based on DFT methods. Considering the structural varieties and comple...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8350033/ https://www.ncbi.nlm.nih.gov/pubmed/34381759 http://dx.doi.org/10.3389/fchem.2021.694156 |
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author | Zhou, Min Xu, Yicheng Cui, Yongliang Zhang, Xianyi Kong, Xianglei |
author_facet | Zhou, Min Xu, Yicheng Cui, Yongliang Zhang, Xianyi Kong, Xianglei |
author_sort | Zhou, Min |
collection | PubMed |
description | A new program for searching global minimum structures of atomic clusters using basin-hopping algorithm based on the xTB method was developed here. The program can be performed with a much higher speed than its replacement directly based on DFT methods. Considering the structural varieties and complexities in finding their global minimum structures, phosphorus cluster cations were studied by the program. The global minimum structures of cationic [Formula: see text] (n = 1–15) clusters are determined through the unbiased structure searching method. In the last step, further DFT optimization was performed for the selected isomers. For [Formula: see text] (n = 1–4, 7), the found global minimum structures are in consistent with the ones previously reported; while for [Formula: see text] (n = 5, 6, 8–12), newly found isomers are more energy-favorable than those previously reported. And those for [Formula: see text] (n = 13–15) are reported here for the first time. Among them, the most stable isomers of [Formula: see text] (n = 4–6, 9) are characterized by their C(3v), C(s), C(2v) and C(s) symmetry, in turn. But those of [Formula: see text] (n = 7, 8, 10–12), no symmetry has been identified. The most stable isomers of [Formula: see text] and [Formula: see text] are characterized by single P-P bonds bridging units inside the clusters. Further analysis shows that the pnicogen bonds play an important role in the stabilization of these clusters. These results show that the new developed program is effective and robust in searching global minimum structures for atom clusters, and it also provides new insights into the role of pnicogen bonds in phosphorus clusters. |
format | Online Article Text |
id | pubmed-8350033 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83500332021-08-10 Search for Global Minimum Structures of [Formula: see text] (n = 1–15) Using xTB-Based Basin-Hopping Algorithm Zhou, Min Xu, Yicheng Cui, Yongliang Zhang, Xianyi Kong, Xianglei Front Chem Chemistry A new program for searching global minimum structures of atomic clusters using basin-hopping algorithm based on the xTB method was developed here. The program can be performed with a much higher speed than its replacement directly based on DFT methods. Considering the structural varieties and complexities in finding their global minimum structures, phosphorus cluster cations were studied by the program. The global minimum structures of cationic [Formula: see text] (n = 1–15) clusters are determined through the unbiased structure searching method. In the last step, further DFT optimization was performed for the selected isomers. For [Formula: see text] (n = 1–4, 7), the found global minimum structures are in consistent with the ones previously reported; while for [Formula: see text] (n = 5, 6, 8–12), newly found isomers are more energy-favorable than those previously reported. And those for [Formula: see text] (n = 13–15) are reported here for the first time. Among them, the most stable isomers of [Formula: see text] (n = 4–6, 9) are characterized by their C(3v), C(s), C(2v) and C(s) symmetry, in turn. But those of [Formula: see text] (n = 7, 8, 10–12), no symmetry has been identified. The most stable isomers of [Formula: see text] and [Formula: see text] are characterized by single P-P bonds bridging units inside the clusters. Further analysis shows that the pnicogen bonds play an important role in the stabilization of these clusters. These results show that the new developed program is effective and robust in searching global minimum structures for atom clusters, and it also provides new insights into the role of pnicogen bonds in phosphorus clusters. Frontiers Media S.A. 2021-07-26 /pmc/articles/PMC8350033/ /pubmed/34381759 http://dx.doi.org/10.3389/fchem.2021.694156 Text en Copyright © 2021 Zhou, Xu, Cui, Zhang and Kong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Chemistry Zhou, Min Xu, Yicheng Cui, Yongliang Zhang, Xianyi Kong, Xianglei Search for Global Minimum Structures of [Formula: see text] (n = 1–15) Using xTB-Based Basin-Hopping Algorithm |
title | Search for Global Minimum Structures of [Formula: see text] (n = 1–15) Using xTB-Based Basin-Hopping Algorithm |
title_full | Search for Global Minimum Structures of [Formula: see text] (n = 1–15) Using xTB-Based Basin-Hopping Algorithm |
title_fullStr | Search for Global Minimum Structures of [Formula: see text] (n = 1–15) Using xTB-Based Basin-Hopping Algorithm |
title_full_unstemmed | Search for Global Minimum Structures of [Formula: see text] (n = 1–15) Using xTB-Based Basin-Hopping Algorithm |
title_short | Search for Global Minimum Structures of [Formula: see text] (n = 1–15) Using xTB-Based Basin-Hopping Algorithm |
title_sort | search for global minimum structures of [formula: see text] (n = 1–15) using xtb-based basin-hopping algorithm |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8350033/ https://www.ncbi.nlm.nih.gov/pubmed/34381759 http://dx.doi.org/10.3389/fchem.2021.694156 |
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