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Whole genome resequencing data for rock pigeon (Columba livia)

OBJECTIVE: Navigation is the most important feature of homing pigeons, however no integrated response to genetic mechanism of navigation has been reported. The generated data herein represent whole-genome resequencing data for homing pigeon and three other breeds of rock pigeons. Selective sweep ana...

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Autores principales: Esmailizadeh, Ali, Kharrati-Koopaee, Hamed, Nanaei, Hojjat Assadoullahpour
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8351366/
https://www.ncbi.nlm.nih.gov/pubmed/34372924
http://dx.doi.org/10.1186/s13104-021-05718-1
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author Esmailizadeh, Ali
Kharrati-Koopaee, Hamed
Nanaei, Hojjat Assadoullahpour
author_facet Esmailizadeh, Ali
Kharrati-Koopaee, Hamed
Nanaei, Hojjat Assadoullahpour
author_sort Esmailizadeh, Ali
collection PubMed
description OBJECTIVE: Navigation is the most important feature of homing pigeons, however no integrated response to genetic mechanism of navigation has been reported. The generated data herein represent whole-genome resequencing data for homing pigeon and three other breeds of rock pigeons. Selective sweep analysis between homing pigeon and other breeds of rock pigeon can provide new insight about identification of candidate genes and biological pathways for homing pigeon ability. DATA DESCRIPTION: Whole-genomes sequence data related to 95 birds from four breeds of rock pigeons including, 29 feral pigeons, 24 Shiraz tumblers, 24 Persian high flyers and 18 homing pigeons were provided. More than 6.94 billion short reads with coverage (average ≈7.50 x) and 407.1 Gb data were produced. Whole genome sequencing was carried out on the Illumina Hiseq 2000 platform using a 350 bp library size and 150 bp paired-end read lengths. The whole genome sequencing data have been submitted at the NCBI SRA Database (PRJNA532675). The presented data set can provide useful genomic information to explain the genetic mechanism of navigation ability of homing pigeons and also testing other genetic hypothesis by genomic analysis.
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spelling pubmed-83513662021-08-09 Whole genome resequencing data for rock pigeon (Columba livia) Esmailizadeh, Ali Kharrati-Koopaee, Hamed Nanaei, Hojjat Assadoullahpour BMC Res Notes Data Note OBJECTIVE: Navigation is the most important feature of homing pigeons, however no integrated response to genetic mechanism of navigation has been reported. The generated data herein represent whole-genome resequencing data for homing pigeon and three other breeds of rock pigeons. Selective sweep analysis between homing pigeon and other breeds of rock pigeon can provide new insight about identification of candidate genes and biological pathways for homing pigeon ability. DATA DESCRIPTION: Whole-genomes sequence data related to 95 birds from four breeds of rock pigeons including, 29 feral pigeons, 24 Shiraz tumblers, 24 Persian high flyers and 18 homing pigeons were provided. More than 6.94 billion short reads with coverage (average ≈7.50 x) and 407.1 Gb data were produced. Whole genome sequencing was carried out on the Illumina Hiseq 2000 platform using a 350 bp library size and 150 bp paired-end read lengths. The whole genome sequencing data have been submitted at the NCBI SRA Database (PRJNA532675). The presented data set can provide useful genomic information to explain the genetic mechanism of navigation ability of homing pigeons and also testing other genetic hypothesis by genomic analysis. BioMed Central 2021-08-09 /pmc/articles/PMC8351366/ /pubmed/34372924 http://dx.doi.org/10.1186/s13104-021-05718-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Esmailizadeh, Ali
Kharrati-Koopaee, Hamed
Nanaei, Hojjat Assadoullahpour
Whole genome resequencing data for rock pigeon (Columba livia)
title Whole genome resequencing data for rock pigeon (Columba livia)
title_full Whole genome resequencing data for rock pigeon (Columba livia)
title_fullStr Whole genome resequencing data for rock pigeon (Columba livia)
title_full_unstemmed Whole genome resequencing data for rock pigeon (Columba livia)
title_short Whole genome resequencing data for rock pigeon (Columba livia)
title_sort whole genome resequencing data for rock pigeon (columba livia)
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8351366/
https://www.ncbi.nlm.nih.gov/pubmed/34372924
http://dx.doi.org/10.1186/s13104-021-05718-1
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