Cargando…

An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma

Recent evidence suggests that aberrant expression of long non-coding RNA (lncRNA) can drive the initiation and progression of malignancies. However, little is known about the prognostic potential of lncRNA. We aimed at constructing a lncRNA-based signature to improve the prognosis prediction of panc...

Descripción completa

Detalles Bibliográficos
Autores principales: Qi, Bing, Liu, Han, Zhou, Qi, Ji, Li, Shi, Xueying, Wei, Yushan, Gu, Yajun, Mizushima, Akio, Xia, Shilin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8351726/
https://www.ncbi.nlm.nih.gov/pubmed/34285140
http://dx.doi.org/10.18632/aging.203323
_version_ 1783736033915961344
author Qi, Bing
Liu, Han
Zhou, Qi
Ji, Li
Shi, Xueying
Wei, Yushan
Gu, Yajun
Mizushima, Akio
Xia, Shilin
author_facet Qi, Bing
Liu, Han
Zhou, Qi
Ji, Li
Shi, Xueying
Wei, Yushan
Gu, Yajun
Mizushima, Akio
Xia, Shilin
author_sort Qi, Bing
collection PubMed
description Recent evidence suggests that aberrant expression of long non-coding RNA (lncRNA) can drive the initiation and progression of malignancies. However, little is known about the prognostic potential of lncRNA. We aimed at constructing a lncRNA-based signature to improve the prognosis prediction of pancreatic adenocarcinoma (PAAD). The PAAD samples with clinical information were obtained from The Cancer Genome Atlas and International Cancer Genome Consortium. We established an eight-IRlncRNA signature in a training cohort. The prognostic value of eight-IRlncRNA signature was validated in two distinct cohorts when compared to other four prognostic models. We continued to analyze its independence in subgroups by univariate and multivariate Cox regression. We constructed a nomogram for clinicopathologic features and 1-, 3-, and 5-year overall survival performance. Moreover, Gene set enrichment analysis and Gene Set Variation Analysis distinguished the typical functions between high- and low-risk groups. In addition, we further observed the different correlations of immune cell between eight IRlncRNAs. Eight-IRlncRNA signature appears to be a good performer to predict the survival capability of PAAD patients, and the nomogram will enable PAAD patients to be more accurately managed in clinical practice.
format Online
Article
Text
id pubmed-8351726
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Impact Journals
record_format MEDLINE/PubMed
spelling pubmed-83517262021-08-10 An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma Qi, Bing Liu, Han Zhou, Qi Ji, Li Shi, Xueying Wei, Yushan Gu, Yajun Mizushima, Akio Xia, Shilin Aging (Albany NY) Research Paper Recent evidence suggests that aberrant expression of long non-coding RNA (lncRNA) can drive the initiation and progression of malignancies. However, little is known about the prognostic potential of lncRNA. We aimed at constructing a lncRNA-based signature to improve the prognosis prediction of pancreatic adenocarcinoma (PAAD). The PAAD samples with clinical information were obtained from The Cancer Genome Atlas and International Cancer Genome Consortium. We established an eight-IRlncRNA signature in a training cohort. The prognostic value of eight-IRlncRNA signature was validated in two distinct cohorts when compared to other four prognostic models. We continued to analyze its independence in subgroups by univariate and multivariate Cox regression. We constructed a nomogram for clinicopathologic features and 1-, 3-, and 5-year overall survival performance. Moreover, Gene set enrichment analysis and Gene Set Variation Analysis distinguished the typical functions between high- and low-risk groups. In addition, we further observed the different correlations of immune cell between eight IRlncRNAs. Eight-IRlncRNA signature appears to be a good performer to predict the survival capability of PAAD patients, and the nomogram will enable PAAD patients to be more accurately managed in clinical practice. Impact Journals 2021-07-20 /pmc/articles/PMC8351726/ /pubmed/34285140 http://dx.doi.org/10.18632/aging.203323 Text en Copyright: © 2021 Qi et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Qi, Bing
Liu, Han
Zhou, Qi
Ji, Li
Shi, Xueying
Wei, Yushan
Gu, Yajun
Mizushima, Akio
Xia, Shilin
An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
title An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
title_full An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
title_fullStr An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
title_full_unstemmed An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
title_short An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
title_sort immune-related lncrna signature for the prognosis of pancreatic adenocarcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8351726/
https://www.ncbi.nlm.nih.gov/pubmed/34285140
http://dx.doi.org/10.18632/aging.203323
work_keys_str_mv AT qibing animmunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT liuhan animmunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT zhouqi animmunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT jili animmunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT shixueying animmunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT weiyushan animmunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT guyajun animmunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT mizushimaakio animmunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT xiashilin animmunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT qibing immunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT liuhan immunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT zhouqi immunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT jili immunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT shixueying immunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT weiyushan immunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT guyajun immunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT mizushimaakio immunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma
AT xiashilin immunerelatedlncrnasignaturefortheprognosisofpancreaticadenocarcinoma