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Toward a systematic conflict resolution framework for ontologies

BACKGROUND: The ontology authoring step in ontology development involves having to make choices about what subject domain knowledge to include. This may concern sorting out ontological differences and making choices between conflicting axioms due to limitations in the logic or the subject domain sem...

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Autores principales: Keet, C. Maria, Grütter, Rolf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8352153/
https://www.ncbi.nlm.nih.gov/pubmed/34372934
http://dx.doi.org/10.1186/s13326-021-00246-0
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author Keet, C. Maria
Grütter, Rolf
author_facet Keet, C. Maria
Grütter, Rolf
author_sort Keet, C. Maria
collection PubMed
description BACKGROUND: The ontology authoring step in ontology development involves having to make choices about what subject domain knowledge to include. This may concern sorting out ontological differences and making choices between conflicting axioms due to limitations in the logic or the subject domain semantics. Examples are dealing with different foundational ontologies in ontology alignment and OWL 2 DL’s transitive object property versus a qualified cardinality constraint. Such conflicts have to be resolved somehow. However, only isolated and fragmented guidance for doing so is available, which therefore results in ad hoc decision-making that may not be the best choice or forgotten about later. RESULTS: This work aims to address this by taking steps towards a framework to deal with the various types of modeling conflicts through meaning negotiation and conflict resolution in a systematic way. It proposes an initial library of common conflicts, a conflict set, typical steps toward resolution, and the software availability and requirements needed for it. The approach was evaluated with an actual case of domain knowledge usage in the context of epizootic disease outbreak, being avian influenza, and running examples with COVID-19 ontologies. CONCLUSIONS: The evaluation demonstrated the potential and feasibility of a conflict resolution framework for ontologies.
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spelling pubmed-83521532021-08-10 Toward a systematic conflict resolution framework for ontologies Keet, C. Maria Grütter, Rolf J Biomed Semantics Research BACKGROUND: The ontology authoring step in ontology development involves having to make choices about what subject domain knowledge to include. This may concern sorting out ontological differences and making choices between conflicting axioms due to limitations in the logic or the subject domain semantics. Examples are dealing with different foundational ontologies in ontology alignment and OWL 2 DL’s transitive object property versus a qualified cardinality constraint. Such conflicts have to be resolved somehow. However, only isolated and fragmented guidance for doing so is available, which therefore results in ad hoc decision-making that may not be the best choice or forgotten about later. RESULTS: This work aims to address this by taking steps towards a framework to deal with the various types of modeling conflicts through meaning negotiation and conflict resolution in a systematic way. It proposes an initial library of common conflicts, a conflict set, typical steps toward resolution, and the software availability and requirements needed for it. The approach was evaluated with an actual case of domain knowledge usage in the context of epizootic disease outbreak, being avian influenza, and running examples with COVID-19 ontologies. CONCLUSIONS: The evaluation demonstrated the potential and feasibility of a conflict resolution framework for ontologies. BioMed Central 2021-08-09 /pmc/articles/PMC8352153/ /pubmed/34372934 http://dx.doi.org/10.1186/s13326-021-00246-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Keet, C. Maria
Grütter, Rolf
Toward a systematic conflict resolution framework for ontologies
title Toward a systematic conflict resolution framework for ontologies
title_full Toward a systematic conflict resolution framework for ontologies
title_fullStr Toward a systematic conflict resolution framework for ontologies
title_full_unstemmed Toward a systematic conflict resolution framework for ontologies
title_short Toward a systematic conflict resolution framework for ontologies
title_sort toward a systematic conflict resolution framework for ontologies
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8352153/
https://www.ncbi.nlm.nih.gov/pubmed/34372934
http://dx.doi.org/10.1186/s13326-021-00246-0
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