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Detection of COVID-19 case clusters in Québec, May–October 2020
OBJECTIVES: The Quebec Public Health Institute (INSPQ) was mandated to develop an automated tool for detecting space-time COVID-19 case clusters to assist regional public health authorities in identifying situations that require public health interventions. This article aims to describe the methodol...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8352554/ https://www.ncbi.nlm.nih.gov/pubmed/34374036 http://dx.doi.org/10.17269/s41997-021-00560-1 |
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author | Lebel, Germain Fortin, Élise Lo, Ernest Boivin, Marie-Claude Tandonnet, Matthieu Gravel, Nathalie |
author_facet | Lebel, Germain Fortin, Élise Lo, Ernest Boivin, Marie-Claude Tandonnet, Matthieu Gravel, Nathalie |
author_sort | Lebel, Germain |
collection | PubMed |
description | OBJECTIVES: The Quebec Public Health Institute (INSPQ) was mandated to develop an automated tool for detecting space-time COVID-19 case clusters to assist regional public health authorities in identifying situations that require public health interventions. This article aims to describe the methodology used and to document the main outcomes achieved. METHODS: New COVID-19 cases are supplied by the “Trajectoire de santé publique” information system, geolocated to civic addresses and then aggregated by day and dissemination area. To target community-level clusters, cases identified as residents of congregate living settings are excluded from the cluster detection analysis. Detection is performed using the space-time scan statistic and Poisson statistical model, and implemented in the SaTScan software. Information on detected clusters is disseminated daily via an online interactive mapping interface. RESULTS: The number of clusters detected tracked with the number of new cases. Slightly more than 4900 statistically significant (p ≤ 0.01) space-time clusters were detected over 14 health regions from May to October 2020. The Montréal region was the most affected. CONCLUSION: Considering the objective of timely cluster detection, the use of near-real-time health surveillance data of varying quality over time and by region constitutes an acceptable compromise between timeliness and data quality. This tool serves to supplement the epidemiologic investigations carried out by regional public health authorities for purposes of COVID-19 management and prevention. |
format | Online Article Text |
id | pubmed-8352554 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-83525542021-08-10 Detection of COVID-19 case clusters in Québec, May–October 2020 Lebel, Germain Fortin, Élise Lo, Ernest Boivin, Marie-Claude Tandonnet, Matthieu Gravel, Nathalie Can J Public Health Special Section on COVID-19: Quantitative Research OBJECTIVES: The Quebec Public Health Institute (INSPQ) was mandated to develop an automated tool for detecting space-time COVID-19 case clusters to assist regional public health authorities in identifying situations that require public health interventions. This article aims to describe the methodology used and to document the main outcomes achieved. METHODS: New COVID-19 cases are supplied by the “Trajectoire de santé publique” information system, geolocated to civic addresses and then aggregated by day and dissemination area. To target community-level clusters, cases identified as residents of congregate living settings are excluded from the cluster detection analysis. Detection is performed using the space-time scan statistic and Poisson statistical model, and implemented in the SaTScan software. Information on detected clusters is disseminated daily via an online interactive mapping interface. RESULTS: The number of clusters detected tracked with the number of new cases. Slightly more than 4900 statistically significant (p ≤ 0.01) space-time clusters were detected over 14 health regions from May to October 2020. The Montréal region was the most affected. CONCLUSION: Considering the objective of timely cluster detection, the use of near-real-time health surveillance data of varying quality over time and by region constitutes an acceptable compromise between timeliness and data quality. This tool serves to supplement the epidemiologic investigations carried out by regional public health authorities for purposes of COVID-19 management and prevention. Springer International Publishing 2021-08-09 /pmc/articles/PMC8352554/ /pubmed/34374036 http://dx.doi.org/10.17269/s41997-021-00560-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Special Section on COVID-19: Quantitative Research Lebel, Germain Fortin, Élise Lo, Ernest Boivin, Marie-Claude Tandonnet, Matthieu Gravel, Nathalie Detection of COVID-19 case clusters in Québec, May–October 2020 |
title | Detection of COVID-19 case clusters in Québec, May–October 2020 |
title_full | Detection of COVID-19 case clusters in Québec, May–October 2020 |
title_fullStr | Detection of COVID-19 case clusters in Québec, May–October 2020 |
title_full_unstemmed | Detection of COVID-19 case clusters in Québec, May–October 2020 |
title_short | Detection of COVID-19 case clusters in Québec, May–October 2020 |
title_sort | detection of covid-19 case clusters in québec, may–october 2020 |
topic | Special Section on COVID-19: Quantitative Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8352554/ https://www.ncbi.nlm.nih.gov/pubmed/34374036 http://dx.doi.org/10.17269/s41997-021-00560-1 |
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