Cargando…

Detection of COVID-19 case clusters in Québec, May–October 2020

OBJECTIVES: The Quebec Public Health Institute (INSPQ) was mandated to develop an automated tool for detecting space-time COVID-19 case clusters to assist regional public health authorities in identifying situations that require public health interventions. This article aims to describe the methodol...

Descripción completa

Detalles Bibliográficos
Autores principales: Lebel, Germain, Fortin, Élise, Lo, Ernest, Boivin, Marie-Claude, Tandonnet, Matthieu, Gravel, Nathalie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8352554/
https://www.ncbi.nlm.nih.gov/pubmed/34374036
http://dx.doi.org/10.17269/s41997-021-00560-1
_version_ 1783736205891862528
author Lebel, Germain
Fortin, Élise
Lo, Ernest
Boivin, Marie-Claude
Tandonnet, Matthieu
Gravel, Nathalie
author_facet Lebel, Germain
Fortin, Élise
Lo, Ernest
Boivin, Marie-Claude
Tandonnet, Matthieu
Gravel, Nathalie
author_sort Lebel, Germain
collection PubMed
description OBJECTIVES: The Quebec Public Health Institute (INSPQ) was mandated to develop an automated tool for detecting space-time COVID-19 case clusters to assist regional public health authorities in identifying situations that require public health interventions. This article aims to describe the methodology used and to document the main outcomes achieved. METHODS: New COVID-19 cases are supplied by the “Trajectoire de santé publique” information system, geolocated to civic addresses and then aggregated by day and dissemination area. To target community-level clusters, cases identified as residents of congregate living settings are excluded from the cluster detection analysis. Detection is performed using the space-time scan statistic and Poisson statistical model, and implemented in the SaTScan software. Information on detected clusters is disseminated daily via an online interactive mapping interface. RESULTS: The number of clusters detected tracked with the number of new cases. Slightly more than 4900 statistically significant (p ≤ 0.01) space-time clusters were detected over 14 health regions from May to October 2020. The Montréal region was the most affected. CONCLUSION: Considering the objective of timely cluster detection, the use of near-real-time health surveillance data of varying quality over time and by region constitutes an acceptable compromise between timeliness and data quality. This tool serves to supplement the epidemiologic investigations carried out by regional public health authorities for purposes of COVID-19 management and prevention.
format Online
Article
Text
id pubmed-8352554
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer International Publishing
record_format MEDLINE/PubMed
spelling pubmed-83525542021-08-10 Detection of COVID-19 case clusters in Québec, May–October 2020 Lebel, Germain Fortin, Élise Lo, Ernest Boivin, Marie-Claude Tandonnet, Matthieu Gravel, Nathalie Can J Public Health Special Section on COVID-19: Quantitative Research OBJECTIVES: The Quebec Public Health Institute (INSPQ) was mandated to develop an automated tool for detecting space-time COVID-19 case clusters to assist regional public health authorities in identifying situations that require public health interventions. This article aims to describe the methodology used and to document the main outcomes achieved. METHODS: New COVID-19 cases are supplied by the “Trajectoire de santé publique” information system, geolocated to civic addresses and then aggregated by day and dissemination area. To target community-level clusters, cases identified as residents of congregate living settings are excluded from the cluster detection analysis. Detection is performed using the space-time scan statistic and Poisson statistical model, and implemented in the SaTScan software. Information on detected clusters is disseminated daily via an online interactive mapping interface. RESULTS: The number of clusters detected tracked with the number of new cases. Slightly more than 4900 statistically significant (p ≤ 0.01) space-time clusters were detected over 14 health regions from May to October 2020. The Montréal region was the most affected. CONCLUSION: Considering the objective of timely cluster detection, the use of near-real-time health surveillance data of varying quality over time and by region constitutes an acceptable compromise between timeliness and data quality. This tool serves to supplement the epidemiologic investigations carried out by regional public health authorities for purposes of COVID-19 management and prevention. Springer International Publishing 2021-08-09 /pmc/articles/PMC8352554/ /pubmed/34374036 http://dx.doi.org/10.17269/s41997-021-00560-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Special Section on COVID-19: Quantitative Research
Lebel, Germain
Fortin, Élise
Lo, Ernest
Boivin, Marie-Claude
Tandonnet, Matthieu
Gravel, Nathalie
Detection of COVID-19 case clusters in Québec, May–October 2020
title Detection of COVID-19 case clusters in Québec, May–October 2020
title_full Detection of COVID-19 case clusters in Québec, May–October 2020
title_fullStr Detection of COVID-19 case clusters in Québec, May–October 2020
title_full_unstemmed Detection of COVID-19 case clusters in Québec, May–October 2020
title_short Detection of COVID-19 case clusters in Québec, May–October 2020
title_sort detection of covid-19 case clusters in québec, may–october 2020
topic Special Section on COVID-19: Quantitative Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8352554/
https://www.ncbi.nlm.nih.gov/pubmed/34374036
http://dx.doi.org/10.17269/s41997-021-00560-1
work_keys_str_mv AT lebelgermain detectionofcovid19caseclustersinquebecmayoctober2020
AT fortinelise detectionofcovid19caseclustersinquebecmayoctober2020
AT loernest detectionofcovid19caseclustersinquebecmayoctober2020
AT boivinmarieclaude detectionofcovid19caseclustersinquebecmayoctober2020
AT tandonnetmatthieu detectionofcovid19caseclustersinquebecmayoctober2020
AT gravelnathalie detectionofcovid19caseclustersinquebecmayoctober2020