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Hyperspectral data as a biodiversity screening tool can differentiate among diverse Neotropical fishes

Hyperspectral data encode information from electromagnetic radiation (i.e., color) of any object in the form of a spectral signature; these data can then be used to distinguish among materials or even map whole landscapes. Although hyperspectral data have been mostly used to study landscape ecology,...

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Autores principales: Kolmann, M. A., Kalacska, M., Lucanus, O., Sousa, L., Wainwright, D., Arroyo-Mora, J. P., Andrade, M. C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8352966/
https://www.ncbi.nlm.nih.gov/pubmed/34373560
http://dx.doi.org/10.1038/s41598-021-95713-0
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author Kolmann, M. A.
Kalacska, M.
Lucanus, O.
Sousa, L.
Wainwright, D.
Arroyo-Mora, J. P.
Andrade, M. C.
author_facet Kolmann, M. A.
Kalacska, M.
Lucanus, O.
Sousa, L.
Wainwright, D.
Arroyo-Mora, J. P.
Andrade, M. C.
author_sort Kolmann, M. A.
collection PubMed
description Hyperspectral data encode information from electromagnetic radiation (i.e., color) of any object in the form of a spectral signature; these data can then be used to distinguish among materials or even map whole landscapes. Although hyperspectral data have been mostly used to study landscape ecology, floral diversity and many other applications in the natural sciences, we propose that spectral signatures can be used for rapid assessment of faunal biodiversity, akin to DNA barcoding and metabarcoding. We demonstrate that spectral signatures of individual, live fish specimens can accurately capture species and clade-level differences in fish coloration, specifically among piranhas and pacus (Family Serrasalmidae), fishes with a long history of taxonomic confusion. We analyzed 47 serrasalmid species and could distinguish spectra among different species and clades, with the method sensitive enough to document changes in fish coloration over ontogeny. Herbivorous pacu spectra were more like one another than they were to piranhas; however, our method also documented interspecific variation in pacus that corresponds to cryptic lineages. While spectra do not serve as an alternative to the collection of curated specimens, hyperspectral data of fishes in the field should help clarify which specimens might be unique or undescribed, complementing existing molecular and morphological techniques.
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spelling pubmed-83529662021-08-11 Hyperspectral data as a biodiversity screening tool can differentiate among diverse Neotropical fishes Kolmann, M. A. Kalacska, M. Lucanus, O. Sousa, L. Wainwright, D. Arroyo-Mora, J. P. Andrade, M. C. Sci Rep Article Hyperspectral data encode information from electromagnetic radiation (i.e., color) of any object in the form of a spectral signature; these data can then be used to distinguish among materials or even map whole landscapes. Although hyperspectral data have been mostly used to study landscape ecology, floral diversity and many other applications in the natural sciences, we propose that spectral signatures can be used for rapid assessment of faunal biodiversity, akin to DNA barcoding and metabarcoding. We demonstrate that spectral signatures of individual, live fish specimens can accurately capture species and clade-level differences in fish coloration, specifically among piranhas and pacus (Family Serrasalmidae), fishes with a long history of taxonomic confusion. We analyzed 47 serrasalmid species and could distinguish spectra among different species and clades, with the method sensitive enough to document changes in fish coloration over ontogeny. Herbivorous pacu spectra were more like one another than they were to piranhas; however, our method also documented interspecific variation in pacus that corresponds to cryptic lineages. While spectra do not serve as an alternative to the collection of curated specimens, hyperspectral data of fishes in the field should help clarify which specimens might be unique or undescribed, complementing existing molecular and morphological techniques. Nature Publishing Group UK 2021-08-09 /pmc/articles/PMC8352966/ /pubmed/34373560 http://dx.doi.org/10.1038/s41598-021-95713-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kolmann, M. A.
Kalacska, M.
Lucanus, O.
Sousa, L.
Wainwright, D.
Arroyo-Mora, J. P.
Andrade, M. C.
Hyperspectral data as a biodiversity screening tool can differentiate among diverse Neotropical fishes
title Hyperspectral data as a biodiversity screening tool can differentiate among diverse Neotropical fishes
title_full Hyperspectral data as a biodiversity screening tool can differentiate among diverse Neotropical fishes
title_fullStr Hyperspectral data as a biodiversity screening tool can differentiate among diverse Neotropical fishes
title_full_unstemmed Hyperspectral data as a biodiversity screening tool can differentiate among diverse Neotropical fishes
title_short Hyperspectral data as a biodiversity screening tool can differentiate among diverse Neotropical fishes
title_sort hyperspectral data as a biodiversity screening tool can differentiate among diverse neotropical fishes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8352966/
https://www.ncbi.nlm.nih.gov/pubmed/34373560
http://dx.doi.org/10.1038/s41598-021-95713-0
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