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Data of bacterial community dynamics resulting from total rumen content exchange in beef cattle

OBJECTIVES: Extensive efforts have been made to characterize the rumen microbiome under various conditions. However, few studies have addressed the long-term impacts of ruminal microbiome dysbiosis and the extent of host control over microbiome stability. These data can also inform host-microbial sy...

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Autores principales: Clemmons, Brooke A., Henniger, Madison T., Myer, Phillip R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8353873/
https://www.ncbi.nlm.nih.gov/pubmed/34376230
http://dx.doi.org/10.1186/s13104-021-05726-1
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author Clemmons, Brooke A.
Henniger, Madison T.
Myer, Phillip R.
author_facet Clemmons, Brooke A.
Henniger, Madison T.
Myer, Phillip R.
author_sort Clemmons, Brooke A.
collection PubMed
description OBJECTIVES: Extensive efforts have been made to characterize the rumen microbiome under various conditions. However, few studies have addressed the long-term impacts of ruminal microbiome dysbiosis and the extent of host control over microbiome stability. These data can also inform host-microbial symbioses. The objective was to develop preliminary data to measure the changes that occur in the rumen bacterial communities following a rumen content exchange to understand the effects major perturbations may impart upon the rumen microbiome, which may be host-driven. DATA DESCRIPTION: We report here an initial rumen content exchange between two SimAngus (Simmental/Angus) non-pregnant, non-lactating cows of ~ 6 years of age weighing 603.4 ± 37.5 kg. To measure bacterial community succession and acclimation following the exchange, rumen content was collected via rumen cannula at the beginning of the study immediately prior to and following the rumen content exchange, and weekly for 12 weeks. The V4 hypervariable region of the 16S rRNA gene was targeted for DNA sequencing and bacterial analysis. Over 12 weeks, numerous genera and diversity varied, before partial return to pre-exchange metrics. These preliminary data help support potential host control for the rumen microbiome, aiding in efforts to define bovine host-microbe relationships.
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spelling pubmed-83538732021-08-11 Data of bacterial community dynamics resulting from total rumen content exchange in beef cattle Clemmons, Brooke A. Henniger, Madison T. Myer, Phillip R. BMC Res Notes Data Note OBJECTIVES: Extensive efforts have been made to characterize the rumen microbiome under various conditions. However, few studies have addressed the long-term impacts of ruminal microbiome dysbiosis and the extent of host control over microbiome stability. These data can also inform host-microbial symbioses. The objective was to develop preliminary data to measure the changes that occur in the rumen bacterial communities following a rumen content exchange to understand the effects major perturbations may impart upon the rumen microbiome, which may be host-driven. DATA DESCRIPTION: We report here an initial rumen content exchange between two SimAngus (Simmental/Angus) non-pregnant, non-lactating cows of ~ 6 years of age weighing 603.4 ± 37.5 kg. To measure bacterial community succession and acclimation following the exchange, rumen content was collected via rumen cannula at the beginning of the study immediately prior to and following the rumen content exchange, and weekly for 12 weeks. The V4 hypervariable region of the 16S rRNA gene was targeted for DNA sequencing and bacterial analysis. Over 12 weeks, numerous genera and diversity varied, before partial return to pre-exchange metrics. These preliminary data help support potential host control for the rumen microbiome, aiding in efforts to define bovine host-microbe relationships. BioMed Central 2021-08-10 /pmc/articles/PMC8353873/ /pubmed/34376230 http://dx.doi.org/10.1186/s13104-021-05726-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Clemmons, Brooke A.
Henniger, Madison T.
Myer, Phillip R.
Data of bacterial community dynamics resulting from total rumen content exchange in beef cattle
title Data of bacterial community dynamics resulting from total rumen content exchange in beef cattle
title_full Data of bacterial community dynamics resulting from total rumen content exchange in beef cattle
title_fullStr Data of bacterial community dynamics resulting from total rumen content exchange in beef cattle
title_full_unstemmed Data of bacterial community dynamics resulting from total rumen content exchange in beef cattle
title_short Data of bacterial community dynamics resulting from total rumen content exchange in beef cattle
title_sort data of bacterial community dynamics resulting from total rumen content exchange in beef cattle
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8353873/
https://www.ncbi.nlm.nih.gov/pubmed/34376230
http://dx.doi.org/10.1186/s13104-021-05726-1
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