Characterization of the complete chloroplast genome of Ilex crenata Thunb. (Aquifoliaceae)

Ilex crenata Thunb. is a species of Aquifoliaceae with high ornamental and ecological values. In this study, the complete chloroplast (cp) genome of I. crenata was assembled and characterized through Illumina sequencing data. The entire cp genome of I. crenata was 157,988 bp in length with 37.64% ov...

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Autores principales: Chong, Xinran, Chen, Hong, Wang, Chuanyong, Zhou, Ting, Li, Yunlong, Zhou, Yanwei, Zhang, Ting, Lu, Xiaoqin, Zhang, Fan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354146/
https://www.ncbi.nlm.nih.gov/pubmed/34395890
http://dx.doi.org/10.1080/23802359.2021.1961626
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author Chong, Xinran
Chen, Hong
Wang, Chuanyong
Zhou, Ting
Li, Yunlong
Zhou, Yanwei
Zhang, Ting
Lu, Xiaoqin
Zhang, Fan
author_facet Chong, Xinran
Chen, Hong
Wang, Chuanyong
Zhou, Ting
Li, Yunlong
Zhou, Yanwei
Zhang, Ting
Lu, Xiaoqin
Zhang, Fan
author_sort Chong, Xinran
collection PubMed
description Ilex crenata Thunb. is a species of Aquifoliaceae with high ornamental and ecological values. In this study, the complete chloroplast (cp) genome of I. crenata was assembled and characterized through Illumina sequencing data. The entire cp genome of I. crenata was 157,988 bp in length with 37.64% overall GC content, containing a large single-copy (LSC) region of 87,414 bp and a small single-copy (SSC) region of 18,422 bp, which were separated by a pair of 26,076 bp inverted repeat (IR) regions. A total of 135 genes were annotated, including 88 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on 78 conserved protein-coding genes demonstrated that I. crenata is closely related to I. viridis and I. szechwanensis.
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spelling pubmed-83541462021-08-13 Characterization of the complete chloroplast genome of Ilex crenata Thunb. (Aquifoliaceae) Chong, Xinran Chen, Hong Wang, Chuanyong Zhou, Ting Li, Yunlong Zhou, Yanwei Zhang, Ting Lu, Xiaoqin Zhang, Fan Mitochondrial DNA B Resour Mitogenome Announcement Ilex crenata Thunb. is a species of Aquifoliaceae with high ornamental and ecological values. In this study, the complete chloroplast (cp) genome of I. crenata was assembled and characterized through Illumina sequencing data. The entire cp genome of I. crenata was 157,988 bp in length with 37.64% overall GC content, containing a large single-copy (LSC) region of 87,414 bp and a small single-copy (SSC) region of 18,422 bp, which were separated by a pair of 26,076 bp inverted repeat (IR) regions. A total of 135 genes were annotated, including 88 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on 78 conserved protein-coding genes demonstrated that I. crenata is closely related to I. viridis and I. szechwanensis. Taylor & Francis 2021-08-09 /pmc/articles/PMC8354146/ /pubmed/34395890 http://dx.doi.org/10.1080/23802359.2021.1961626 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chong, Xinran
Chen, Hong
Wang, Chuanyong
Zhou, Ting
Li, Yunlong
Zhou, Yanwei
Zhang, Ting
Lu, Xiaoqin
Zhang, Fan
Characterization of the complete chloroplast genome of Ilex crenata Thunb. (Aquifoliaceae)
title Characterization of the complete chloroplast genome of Ilex crenata Thunb. (Aquifoliaceae)
title_full Characterization of the complete chloroplast genome of Ilex crenata Thunb. (Aquifoliaceae)
title_fullStr Characterization of the complete chloroplast genome of Ilex crenata Thunb. (Aquifoliaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Ilex crenata Thunb. (Aquifoliaceae)
title_short Characterization of the complete chloroplast genome of Ilex crenata Thunb. (Aquifoliaceae)
title_sort characterization of the complete chloroplast genome of ilex crenata thunb. (aquifoliaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354146/
https://www.ncbi.nlm.nih.gov/pubmed/34395890
http://dx.doi.org/10.1080/23802359.2021.1961626
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