The complete chloroplast genome sequence of Quercus schottkyana, and comparative analysis with related species

In this study, we sequenced the complete chloroplast genome of Quercus schottkyana. The circular genome is 160,746 bp in size, featuring a typical quadripartite structure comprising one large single-copy region (LSC, 90,136 bp), one small single-copy region (SSC, 18,942 bp), and two copies of invert...

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Autores principales: Li, Tian-Tian, Luo, Chang-Sha, Mou, Hong-Lin, Jiang, Xiao-Long, Xu, Gang-Biao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354149/
https://www.ncbi.nlm.nih.gov/pubmed/34395892
http://dx.doi.org/10.1080/23802359.2021.1961630
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author Li, Tian-Tian
Luo, Chang-Sha
Mou, Hong-Lin
Jiang, Xiao-Long
Xu, Gang-Biao
author_facet Li, Tian-Tian
Luo, Chang-Sha
Mou, Hong-Lin
Jiang, Xiao-Long
Xu, Gang-Biao
author_sort Li, Tian-Tian
collection PubMed
description In this study, we sequenced the complete chloroplast genome of Quercus schottkyana. The circular genome is 160,746 bp in size, featuring a typical quadripartite structure comprising one large single-copy region (LSC, 90,136 bp), one small single-copy region (SSC, 18,942 bp), and two copies of inverted repeat regions (IRs, 25,834 bp). The genome contains 131 genes, including 86 protein-coding genes, 37 transfer RNA genes, and 8 ribosomal RNA genes. The overall GC content is 36.90%. The maximum likelihood phylogenetic tree reconstructed using IQ-TREE indicated that Q. schottkyana has a closer relationship with Quercus sichourensis and Quercus acuta.
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spelling pubmed-83541492021-08-13 The complete chloroplast genome sequence of Quercus schottkyana, and comparative analysis with related species Li, Tian-Tian Luo, Chang-Sha Mou, Hong-Lin Jiang, Xiao-Long Xu, Gang-Biao Mitochondrial DNA B Resour Mitogenome Announcement In this study, we sequenced the complete chloroplast genome of Quercus schottkyana. The circular genome is 160,746 bp in size, featuring a typical quadripartite structure comprising one large single-copy region (LSC, 90,136 bp), one small single-copy region (SSC, 18,942 bp), and two copies of inverted repeat regions (IRs, 25,834 bp). The genome contains 131 genes, including 86 protein-coding genes, 37 transfer RNA genes, and 8 ribosomal RNA genes. The overall GC content is 36.90%. The maximum likelihood phylogenetic tree reconstructed using IQ-TREE indicated that Q. schottkyana has a closer relationship with Quercus sichourensis and Quercus acuta. Taylor & Francis 2021-08-09 /pmc/articles/PMC8354149/ /pubmed/34395892 http://dx.doi.org/10.1080/23802359.2021.1961630 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Tian-Tian
Luo, Chang-Sha
Mou, Hong-Lin
Jiang, Xiao-Long
Xu, Gang-Biao
The complete chloroplast genome sequence of Quercus schottkyana, and comparative analysis with related species
title The complete chloroplast genome sequence of Quercus schottkyana, and comparative analysis with related species
title_full The complete chloroplast genome sequence of Quercus schottkyana, and comparative analysis with related species
title_fullStr The complete chloroplast genome sequence of Quercus schottkyana, and comparative analysis with related species
title_full_unstemmed The complete chloroplast genome sequence of Quercus schottkyana, and comparative analysis with related species
title_short The complete chloroplast genome sequence of Quercus schottkyana, and comparative analysis with related species
title_sort complete chloroplast genome sequence of quercus schottkyana, and comparative analysis with related species
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354149/
https://www.ncbi.nlm.nih.gov/pubmed/34395892
http://dx.doi.org/10.1080/23802359.2021.1961630
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