Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae)

Amaranthus viridis is an important medicinal herb. In this study, the complete chloroplast genome (plastome) of A. viridis was repotred. It was a circular molecular of 150,452 bp in length and consists of a large single-copy region (LSC, 83,832 bp), a small single-copy region (SSC, 17,914 bp), and t...

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Autores principales: Ding, Dian-Bin, Pang, Qi-Hang, Han, Xiao-Jun, Fan, Shou-Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354152/
https://www.ncbi.nlm.nih.gov/pubmed/34395893
http://dx.doi.org/10.1080/23802359.2021.1961631
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author Ding, Dian-Bin
Pang, Qi-Hang
Han, Xiao-Jun
Fan, Shou-Jin
author_facet Ding, Dian-Bin
Pang, Qi-Hang
Han, Xiao-Jun
Fan, Shou-Jin
author_sort Ding, Dian-Bin
collection PubMed
description Amaranthus viridis is an important medicinal herb. In this study, the complete chloroplast genome (plastome) of A. viridis was repotred. It was a circular molecular of 150,452 bp in length and consists of a large single-copy region (LSC, 83,832 bp), a small single-copy region (SSC, 17,914 bp), and two inverted repeats (IRs, 24,353 bp for each) regions. The overall GC content was 36.6%. This plastome encodes 113 unique genes, including 79 protein-coding genes, 30 tRNAs, and four rRNAs. The phylogenetic tree of 18 Amaranthaceae chloroplast genomes supported that A. viridis was closely related to A. hybridus.
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spelling pubmed-83541522021-08-13 Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae) Ding, Dian-Bin Pang, Qi-Hang Han, Xiao-Jun Fan, Shou-Jin Mitochondrial DNA B Resour Mitogenome Announcement Amaranthus viridis is an important medicinal herb. In this study, the complete chloroplast genome (plastome) of A. viridis was repotred. It was a circular molecular of 150,452 bp in length and consists of a large single-copy region (LSC, 83,832 bp), a small single-copy region (SSC, 17,914 bp), and two inverted repeats (IRs, 24,353 bp for each) regions. The overall GC content was 36.6%. This plastome encodes 113 unique genes, including 79 protein-coding genes, 30 tRNAs, and four rRNAs. The phylogenetic tree of 18 Amaranthaceae chloroplast genomes supported that A. viridis was closely related to A. hybridus. Taylor & Francis 2021-08-09 /pmc/articles/PMC8354152/ /pubmed/34395893 http://dx.doi.org/10.1080/23802359.2021.1961631 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ding, Dian-Bin
Pang, Qi-Hang
Han, Xiao-Jun
Fan, Shou-Jin
Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae)
title Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae)
title_full Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae)
title_fullStr Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae)
title_full_unstemmed Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae)
title_short Characterization and phylogenetic analysis of the complete chloroplast genome of Amaranthus viridis (Amaranthaceae)
title_sort characterization and phylogenetic analysis of the complete chloroplast genome of amaranthus viridis (amaranthaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354152/
https://www.ncbi.nlm.nih.gov/pubmed/34395893
http://dx.doi.org/10.1080/23802359.2021.1961631
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