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The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae
Rhododendron mole (Blume) G. Don is an attractive ornamental and valuable medicinal plant which widely distributed in the southern regions of China. In order to promote the studies on the genetic diversity of this species, we assembled the complete chloroplast (cp) genome of R. molle by using the ge...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354172/ https://www.ncbi.nlm.nih.gov/pubmed/34395886 http://dx.doi.org/10.1080/23802359.2021.1959458 |
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author | Liu, Yan Li, Qiaoyun Wang, Ling Wu, Linshi Huang, Yaqi Zhang, Juan Song, Yin Liao, Juyang |
author_facet | Liu, Yan Li, Qiaoyun Wang, Ling Wu, Linshi Huang, Yaqi Zhang, Juan Song, Yin Liao, Juyang |
author_sort | Liu, Yan |
collection | PubMed |
description | Rhododendron mole (Blume) G. Don is an attractive ornamental and valuable medicinal plant which widely distributed in the southern regions of China. In order to promote the studies on the genetic diversity of this species, we assembled the complete chloroplast (cp) genome of R. molle by using the genome skimming approach. The results showed that the cp genome of R. molle exhibited a quadripartite cycle with 197,877 bp, comprising of two inverted repeats (IRs) of 43,831 bp separated by a large single copy (LSC) region of 110,189 bp and a quite small single copy (SSC) region of 26 bp. It encodes 146 genes, including 92 protein-coding, 46 tRNA, and eight rRNA genes. The overall GC content of the cp genome was 36.0%. The phylogenetic analysis indicated that R. molle is closely related to R. delavayi. Thus, the cp genome sequence of R. molle provides a rich source of genetic information for studies on Rhododendron taxonomy, phylogeny, and evolution, as well as lays the foundation for further development and utilization of R. molle. |
format | Online Article Text |
id | pubmed-8354172 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-83541722021-08-13 The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae Liu, Yan Li, Qiaoyun Wang, Ling Wu, Linshi Huang, Yaqi Zhang, Juan Song, Yin Liao, Juyang Mitochondrial DNA B Resour Mitogenome Announcement Rhododendron mole (Blume) G. Don is an attractive ornamental and valuable medicinal plant which widely distributed in the southern regions of China. In order to promote the studies on the genetic diversity of this species, we assembled the complete chloroplast (cp) genome of R. molle by using the genome skimming approach. The results showed that the cp genome of R. molle exhibited a quadripartite cycle with 197,877 bp, comprising of two inverted repeats (IRs) of 43,831 bp separated by a large single copy (LSC) region of 110,189 bp and a quite small single copy (SSC) region of 26 bp. It encodes 146 genes, including 92 protein-coding, 46 tRNA, and eight rRNA genes. The overall GC content of the cp genome was 36.0%. The phylogenetic analysis indicated that R. molle is closely related to R. delavayi. Thus, the cp genome sequence of R. molle provides a rich source of genetic information for studies on Rhododendron taxonomy, phylogeny, and evolution, as well as lays the foundation for further development and utilization of R. molle. Taylor & Francis 2021-08-09 /pmc/articles/PMC8354172/ /pubmed/34395886 http://dx.doi.org/10.1080/23802359.2021.1959458 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Liu, Yan Li, Qiaoyun Wang, Ling Wu, Linshi Huang, Yaqi Zhang, Juan Song, Yin Liao, Juyang The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae |
title | The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae |
title_full | The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae |
title_fullStr | The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae |
title_full_unstemmed | The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae |
title_short | The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae |
title_sort | complete chloroplast genome of rhododendron molle and its phylogenetic position within ericaceae |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354172/ https://www.ncbi.nlm.nih.gov/pubmed/34395886 http://dx.doi.org/10.1080/23802359.2021.1959458 |
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