High-Quality Genome Reconstruction of Candida albicans CHN1 Using Nanopore and Illumina Sequencing and Hybrid Assembly

We report an improved, nearly closed, high-quality draft genome reconstruction of the Candida albicans CHN1 strain (ATCC MYA-4779), a human isolate, using Illumina and Nanopore sequencing. Covering six complete and two partial nuclear chromosomes along with a partial mitochondrial genome, this assem...

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Detalles Bibliográficos
Autores principales: Garg, Shipra, Ranjan, Piyush, Erb-Downward, John R., Huffnagle, Gary B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2021
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354536/
https://www.ncbi.nlm.nih.gov/pubmed/34110235
http://dx.doi.org/10.1128/MRA.00299-21
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author Garg, Shipra
Ranjan, Piyush
Erb-Downward, John R.
Huffnagle, Gary B.
author_facet Garg, Shipra
Ranjan, Piyush
Erb-Downward, John R.
Huffnagle, Gary B.
author_sort Garg, Shipra
collection PubMed
description We report an improved, nearly closed, high-quality draft genome reconstruction of the Candida albicans CHN1 strain (ATCC MYA-4779), a human isolate, using Illumina and Nanopore sequencing. Covering six complete and two partial nuclear chromosomes along with a partial mitochondrial genome, this assembly is 14,787,852 bases in size, with 5,935 genes.
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spelling pubmed-83545362021-08-19 High-Quality Genome Reconstruction of Candida albicans CHN1 Using Nanopore and Illumina Sequencing and Hybrid Assembly Garg, Shipra Ranjan, Piyush Erb-Downward, John R. Huffnagle, Gary B. Microbiol Resour Announc Genome Sequences We report an improved, nearly closed, high-quality draft genome reconstruction of the Candida albicans CHN1 strain (ATCC MYA-4779), a human isolate, using Illumina and Nanopore sequencing. Covering six complete and two partial nuclear chromosomes along with a partial mitochondrial genome, this assembly is 14,787,852 bases in size, with 5,935 genes. American Society for Microbiology 2021-06-10 /pmc/articles/PMC8354536/ /pubmed/34110235 http://dx.doi.org/10.1128/MRA.00299-21 Text en Copyright © 2021 Garg et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Garg, Shipra
Ranjan, Piyush
Erb-Downward, John R.
Huffnagle, Gary B.
High-Quality Genome Reconstruction of Candida albicans CHN1 Using Nanopore and Illumina Sequencing and Hybrid Assembly
title High-Quality Genome Reconstruction of Candida albicans CHN1 Using Nanopore and Illumina Sequencing and Hybrid Assembly
title_full High-Quality Genome Reconstruction of Candida albicans CHN1 Using Nanopore and Illumina Sequencing and Hybrid Assembly
title_fullStr High-Quality Genome Reconstruction of Candida albicans CHN1 Using Nanopore and Illumina Sequencing and Hybrid Assembly
title_full_unstemmed High-Quality Genome Reconstruction of Candida albicans CHN1 Using Nanopore and Illumina Sequencing and Hybrid Assembly
title_short High-Quality Genome Reconstruction of Candida albicans CHN1 Using Nanopore and Illumina Sequencing and Hybrid Assembly
title_sort high-quality genome reconstruction of candida albicans chn1 using nanopore and illumina sequencing and hybrid assembly
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354536/
https://www.ncbi.nlm.nih.gov/pubmed/34110235
http://dx.doi.org/10.1128/MRA.00299-21
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