Cargando…
Applying machine learning to optical coherence tomography images for automated tissue classification in brain metastases
PURPOSE: A precise resection of the entire tumor tissue during surgery for brain metastases is essential to reduce local recurrence. Conventional intraoperative imaging techniques all have limitations in detecting tumor remnants. Therefore, there is a need for innovative new imaging methods such as...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354973/ https://www.ncbi.nlm.nih.gov/pubmed/34053010 http://dx.doi.org/10.1007/s11548-021-02412-2 |
_version_ | 1783736690929565696 |
---|---|
author | Möller, Jens Bartsch, Alexander Lenz, Marcel Tischoff, Iris Krug, Robin Welp, Hubert Hofmann, Martin R. Schmieder, Kirsten Miller, Dorothea |
author_facet | Möller, Jens Bartsch, Alexander Lenz, Marcel Tischoff, Iris Krug, Robin Welp, Hubert Hofmann, Martin R. Schmieder, Kirsten Miller, Dorothea |
author_sort | Möller, Jens |
collection | PubMed |
description | PURPOSE: A precise resection of the entire tumor tissue during surgery for brain metastases is essential to reduce local recurrence. Conventional intraoperative imaging techniques all have limitations in detecting tumor remnants. Therefore, there is a need for innovative new imaging methods such as optical coherence tomography (OCT). The purpose of this study is to discriminate brain metastases from healthy brain tissue in an ex vivo setting by applying texture analysis and machine learning algorithms for tissue classification to OCT images. METHODS: Tumor and healthy tissue samples were collected during resection of brain metastases. Samples were imaged using OCT. Texture features were extracted from B-scans. Then, a machine learning algorithm using principal component analysis (PCA) and support vector machines (SVM) was applied to the OCT scans for classification. As a gold standard, an experienced pathologist examined the tissue samples histologically and determined the percentage of vital tumor, necrosis and healthy tissue of each sample. A total of 14.336 B-scans from 14 tissue samples were included in the classification analysis. RESULTS: We were able to discriminate vital tumor from healthy brain tissue with an accuracy of 95.75%. By comparing necrotic tissue and healthy tissue, a classification accuracy of 99.10% was obtained. A generalized classification between brain metastases (vital tumor and necrosis) and healthy tissue was achieved with an accuracy of 96.83%. CONCLUSIONS: An automated classification of brain metastases and healthy brain tissue is feasible using OCT imaging, extracted texture features and machine learning with PCA and SVM. The established approach can prospectively provide the surgeon with additional information about the tissue, thus optimizing the extent of tumor resection and minimizing the risk of local recurrences. |
format | Online Article Text |
id | pubmed-8354973 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-83549732021-08-25 Applying machine learning to optical coherence tomography images for automated tissue classification in brain metastases Möller, Jens Bartsch, Alexander Lenz, Marcel Tischoff, Iris Krug, Robin Welp, Hubert Hofmann, Martin R. Schmieder, Kirsten Miller, Dorothea Int J Comput Assist Radiol Surg Original Article PURPOSE: A precise resection of the entire tumor tissue during surgery for brain metastases is essential to reduce local recurrence. Conventional intraoperative imaging techniques all have limitations in detecting tumor remnants. Therefore, there is a need for innovative new imaging methods such as optical coherence tomography (OCT). The purpose of this study is to discriminate brain metastases from healthy brain tissue in an ex vivo setting by applying texture analysis and machine learning algorithms for tissue classification to OCT images. METHODS: Tumor and healthy tissue samples were collected during resection of brain metastases. Samples were imaged using OCT. Texture features were extracted from B-scans. Then, a machine learning algorithm using principal component analysis (PCA) and support vector machines (SVM) was applied to the OCT scans for classification. As a gold standard, an experienced pathologist examined the tissue samples histologically and determined the percentage of vital tumor, necrosis and healthy tissue of each sample. A total of 14.336 B-scans from 14 tissue samples were included in the classification analysis. RESULTS: We were able to discriminate vital tumor from healthy brain tissue with an accuracy of 95.75%. By comparing necrotic tissue and healthy tissue, a classification accuracy of 99.10% was obtained. A generalized classification between brain metastases (vital tumor and necrosis) and healthy tissue was achieved with an accuracy of 96.83%. CONCLUSIONS: An automated classification of brain metastases and healthy brain tissue is feasible using OCT imaging, extracted texture features and machine learning with PCA and SVM. The established approach can prospectively provide the surgeon with additional information about the tissue, thus optimizing the extent of tumor resection and minimizing the risk of local recurrences. Springer International Publishing 2021-05-30 2021 /pmc/articles/PMC8354973/ /pubmed/34053010 http://dx.doi.org/10.1007/s11548-021-02412-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Möller, Jens Bartsch, Alexander Lenz, Marcel Tischoff, Iris Krug, Robin Welp, Hubert Hofmann, Martin R. Schmieder, Kirsten Miller, Dorothea Applying machine learning to optical coherence tomography images for automated tissue classification in brain metastases |
title | Applying machine learning to optical coherence tomography images for automated tissue classification in brain metastases |
title_full | Applying machine learning to optical coherence tomography images for automated tissue classification in brain metastases |
title_fullStr | Applying machine learning to optical coherence tomography images for automated tissue classification in brain metastases |
title_full_unstemmed | Applying machine learning to optical coherence tomography images for automated tissue classification in brain metastases |
title_short | Applying machine learning to optical coherence tomography images for automated tissue classification in brain metastases |
title_sort | applying machine learning to optical coherence tomography images for automated tissue classification in brain metastases |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354973/ https://www.ncbi.nlm.nih.gov/pubmed/34053010 http://dx.doi.org/10.1007/s11548-021-02412-2 |
work_keys_str_mv | AT mollerjens applyingmachinelearningtoopticalcoherencetomographyimagesforautomatedtissueclassificationinbrainmetastases AT bartschalexander applyingmachinelearningtoopticalcoherencetomographyimagesforautomatedtissueclassificationinbrainmetastases AT lenzmarcel applyingmachinelearningtoopticalcoherencetomographyimagesforautomatedtissueclassificationinbrainmetastases AT tischoffiris applyingmachinelearningtoopticalcoherencetomographyimagesforautomatedtissueclassificationinbrainmetastases AT krugrobin applyingmachinelearningtoopticalcoherencetomographyimagesforautomatedtissueclassificationinbrainmetastases AT welphubert applyingmachinelearningtoopticalcoherencetomographyimagesforautomatedtissueclassificationinbrainmetastases AT hofmannmartinr applyingmachinelearningtoopticalcoherencetomographyimagesforautomatedtissueclassificationinbrainmetastases AT schmiederkirsten applyingmachinelearningtoopticalcoherencetomographyimagesforautomatedtissueclassificationinbrainmetastases AT millerdorothea applyingmachinelearningtoopticalcoherencetomographyimagesforautomatedtissueclassificationinbrainmetastases |