Cargando…

Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images

The presentation of the COVID19 has endangered several million lives worldwide causing thousands of deaths every day. Evolution of COVID19 as a pandemic calls for automated solutions for initial screening and treatment management. In addition to the thermal scanning mechanisms, findings from chest X...

Descripción completa

Detalles Bibliográficos
Autores principales: Sundaram, Sankar Ganesh, Aloyuni, Saleh Abdullah, Alharbi, Raed Abdullah, Alqahtani, Tariq, Sikkandar, Mohamed Yacin, Subbiah, Chidambaram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8356217/
https://www.ncbi.nlm.nih.gov/pubmed/34395159
http://dx.doi.org/10.1007/s13369-021-05958-0
_version_ 1783736902534299648
author Sundaram, Sankar Ganesh
Aloyuni, Saleh Abdullah
Alharbi, Raed Abdullah
Alqahtani, Tariq
Sikkandar, Mohamed Yacin
Subbiah, Chidambaram
author_facet Sundaram, Sankar Ganesh
Aloyuni, Saleh Abdullah
Alharbi, Raed Abdullah
Alqahtani, Tariq
Sikkandar, Mohamed Yacin
Subbiah, Chidambaram
author_sort Sundaram, Sankar Ganesh
collection PubMed
description The presentation of the COVID19 has endangered several million lives worldwide causing thousands of deaths every day. Evolution of COVID19 as a pandemic calls for automated solutions for initial screening and treatment management. In addition to the thermal scanning mechanisms, findings from chest X-ray imaging examinations are reliable predictors in COVID19 detection, long-term monitoring and severity evaluation. This paper presents a novel deep transfer learning based framework for COVID19 detection and segmentation of infections from chest X-ray images. It is realized as a two-stage cascaded framework with classifier and segmentation subnetwork models. The classifier is modeled as a fine-tuned residual SqueezeNet network, and the segmentation network is implemented as a fine-tuned SegNet semantic segmentation network. The segmentation task is enhanced with a bioinspired Gaussian Mixture Model-based super pixel segmentation. This framework is trained and tested with two public datasets for binary and multiclass classifications and infection segmentation. It achieves accuracies of 99.69% and 99.48% for binary and three class classifications, and a mean accuracy of 83.437% for segmentation. Experimental results and comparative evaluations demonstrate the superiority of this unified model and signify potential extensions for biomarker definition and severity quantization.
format Online
Article
Text
id pubmed-8356217
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-83562172021-08-11 Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images Sundaram, Sankar Ganesh Aloyuni, Saleh Abdullah Alharbi, Raed Abdullah Alqahtani, Tariq Sikkandar, Mohamed Yacin Subbiah, Chidambaram Arab J Sci Eng Research Article-Computer Engineering and Computer Science The presentation of the COVID19 has endangered several million lives worldwide causing thousands of deaths every day. Evolution of COVID19 as a pandemic calls for automated solutions for initial screening and treatment management. In addition to the thermal scanning mechanisms, findings from chest X-ray imaging examinations are reliable predictors in COVID19 detection, long-term monitoring and severity evaluation. This paper presents a novel deep transfer learning based framework for COVID19 detection and segmentation of infections from chest X-ray images. It is realized as a two-stage cascaded framework with classifier and segmentation subnetwork models. The classifier is modeled as a fine-tuned residual SqueezeNet network, and the segmentation network is implemented as a fine-tuned SegNet semantic segmentation network. The segmentation task is enhanced with a bioinspired Gaussian Mixture Model-based super pixel segmentation. This framework is trained and tested with two public datasets for binary and multiclass classifications and infection segmentation. It achieves accuracies of 99.69% and 99.48% for binary and three class classifications, and a mean accuracy of 83.437% for segmentation. Experimental results and comparative evaluations demonstrate the superiority of this unified model and signify potential extensions for biomarker definition and severity quantization. Springer Berlin Heidelberg 2021-08-11 2022 /pmc/articles/PMC8356217/ /pubmed/34395159 http://dx.doi.org/10.1007/s13369-021-05958-0 Text en © King Fahd University of Petroleum & Minerals 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Research Article-Computer Engineering and Computer Science
Sundaram, Sankar Ganesh
Aloyuni, Saleh Abdullah
Alharbi, Raed Abdullah
Alqahtani, Tariq
Sikkandar, Mohamed Yacin
Subbiah, Chidambaram
Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images
title Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images
title_full Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images
title_fullStr Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images
title_full_unstemmed Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images
title_short Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images
title_sort deep transfer learning based unified framework for covid19 classification and infection detection from chest x-ray images
topic Research Article-Computer Engineering and Computer Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8356217/
https://www.ncbi.nlm.nih.gov/pubmed/34395159
http://dx.doi.org/10.1007/s13369-021-05958-0
work_keys_str_mv AT sundaramsankarganesh deeptransferlearningbasedunifiedframeworkforcovid19classificationandinfectiondetectionfromchestxrayimages
AT aloyunisalehabdullah deeptransferlearningbasedunifiedframeworkforcovid19classificationandinfectiondetectionfromchestxrayimages
AT alharbiraedabdullah deeptransferlearningbasedunifiedframeworkforcovid19classificationandinfectiondetectionfromchestxrayimages
AT alqahtanitariq deeptransferlearningbasedunifiedframeworkforcovid19classificationandinfectiondetectionfromchestxrayimages
AT sikkandarmohamedyacin deeptransferlearningbasedunifiedframeworkforcovid19classificationandinfectiondetectionfromchestxrayimages
AT subbiahchidambaram deeptransferlearningbasedunifiedframeworkforcovid19classificationandinfectiondetectionfromchestxrayimages