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Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images
The presentation of the COVID19 has endangered several million lives worldwide causing thousands of deaths every day. Evolution of COVID19 as a pandemic calls for automated solutions for initial screening and treatment management. In addition to the thermal scanning mechanisms, findings from chest X...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8356217/ https://www.ncbi.nlm.nih.gov/pubmed/34395159 http://dx.doi.org/10.1007/s13369-021-05958-0 |
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author | Sundaram, Sankar Ganesh Aloyuni, Saleh Abdullah Alharbi, Raed Abdullah Alqahtani, Tariq Sikkandar, Mohamed Yacin Subbiah, Chidambaram |
author_facet | Sundaram, Sankar Ganesh Aloyuni, Saleh Abdullah Alharbi, Raed Abdullah Alqahtani, Tariq Sikkandar, Mohamed Yacin Subbiah, Chidambaram |
author_sort | Sundaram, Sankar Ganesh |
collection | PubMed |
description | The presentation of the COVID19 has endangered several million lives worldwide causing thousands of deaths every day. Evolution of COVID19 as a pandemic calls for automated solutions for initial screening and treatment management. In addition to the thermal scanning mechanisms, findings from chest X-ray imaging examinations are reliable predictors in COVID19 detection, long-term monitoring and severity evaluation. This paper presents a novel deep transfer learning based framework for COVID19 detection and segmentation of infections from chest X-ray images. It is realized as a two-stage cascaded framework with classifier and segmentation subnetwork models. The classifier is modeled as a fine-tuned residual SqueezeNet network, and the segmentation network is implemented as a fine-tuned SegNet semantic segmentation network. The segmentation task is enhanced with a bioinspired Gaussian Mixture Model-based super pixel segmentation. This framework is trained and tested with two public datasets for binary and multiclass classifications and infection segmentation. It achieves accuracies of 99.69% and 99.48% for binary and three class classifications, and a mean accuracy of 83.437% for segmentation. Experimental results and comparative evaluations demonstrate the superiority of this unified model and signify potential extensions for biomarker definition and severity quantization. |
format | Online Article Text |
id | pubmed-8356217 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-83562172021-08-11 Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images Sundaram, Sankar Ganesh Aloyuni, Saleh Abdullah Alharbi, Raed Abdullah Alqahtani, Tariq Sikkandar, Mohamed Yacin Subbiah, Chidambaram Arab J Sci Eng Research Article-Computer Engineering and Computer Science The presentation of the COVID19 has endangered several million lives worldwide causing thousands of deaths every day. Evolution of COVID19 as a pandemic calls for automated solutions for initial screening and treatment management. In addition to the thermal scanning mechanisms, findings from chest X-ray imaging examinations are reliable predictors in COVID19 detection, long-term monitoring and severity evaluation. This paper presents a novel deep transfer learning based framework for COVID19 detection and segmentation of infections from chest X-ray images. It is realized as a two-stage cascaded framework with classifier and segmentation subnetwork models. The classifier is modeled as a fine-tuned residual SqueezeNet network, and the segmentation network is implemented as a fine-tuned SegNet semantic segmentation network. The segmentation task is enhanced with a bioinspired Gaussian Mixture Model-based super pixel segmentation. This framework is trained and tested with two public datasets for binary and multiclass classifications and infection segmentation. It achieves accuracies of 99.69% and 99.48% for binary and three class classifications, and a mean accuracy of 83.437% for segmentation. Experimental results and comparative evaluations demonstrate the superiority of this unified model and signify potential extensions for biomarker definition and severity quantization. Springer Berlin Heidelberg 2021-08-11 2022 /pmc/articles/PMC8356217/ /pubmed/34395159 http://dx.doi.org/10.1007/s13369-021-05958-0 Text en © King Fahd University of Petroleum & Minerals 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Research Article-Computer Engineering and Computer Science Sundaram, Sankar Ganesh Aloyuni, Saleh Abdullah Alharbi, Raed Abdullah Alqahtani, Tariq Sikkandar, Mohamed Yacin Subbiah, Chidambaram Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images |
title | Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images |
title_full | Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images |
title_fullStr | Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images |
title_full_unstemmed | Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images |
title_short | Deep Transfer Learning Based Unified Framework for COVID19 Classification and Infection Detection from Chest X-Ray Images |
title_sort | deep transfer learning based unified framework for covid19 classification and infection detection from chest x-ray images |
topic | Research Article-Computer Engineering and Computer Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8356217/ https://www.ncbi.nlm.nih.gov/pubmed/34395159 http://dx.doi.org/10.1007/s13369-021-05958-0 |
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