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A Bayesian estimate of the early COVID-19 infection fatality ratio in Brazil based on a random seroprevalence survey

Background:A number of estimates of the infection fatality ratio (IFR) of SARS-CoV-2 in different countries have been published. In Brazil, the fragile political situation, together with socioeconomic and ethnic diversity, could result in substantially different IFR estimates. Methods:We infer the I...

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Autores principales: Marra, Valerio, Quartin, Miguel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8358085/
https://www.ncbi.nlm.nih.gov/pubmed/34390858
http://dx.doi.org/10.1016/j.ijid.2021.08.016
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author Marra, Valerio
Quartin, Miguel
author_facet Marra, Valerio
Quartin, Miguel
author_sort Marra, Valerio
collection PubMed
description Background:A number of estimates of the infection fatality ratio (IFR) of SARS-CoV-2 in different countries have been published. In Brazil, the fragile political situation, together with socioeconomic and ethnic diversity, could result in substantially different IFR estimates. Methods:We infer the IFR in Brazil in 2020 by combining three datasets. We compute the prevalence via the population-based seroprevalence survey, EPICOVID19-BR. For the fatalities we obtain the absolute number using the public Painel Coronavírus dataset and the age-relative number using the public SIVEP-Gripe dataset. The time delay between the development of antibodies and subsequent fatality is estimated via the SIVEP-Gripe dataset. We obtain the IFR for each survey stage and 27 federal states. We include the effect of fading IgG antibody levels by marginalizing over the test detectability time window. Results:We infer a country-wide average IFR (maximum posterior and 95% CI) of 1.03% (0.88–1.22%) and age-specific IFRs of 0.032% (0.023–0.041%) [< 30 years], 0.22% (0.18–0.27%) [30–49 years], 1.2% (1.0–1.5%) [50–69 years], and 3.0% (2.4–3.9%) [[Formula: see text] 70 years]. We find that the fatality ratio in the country increased significantly at the end of June 2020, likely due to the increased strain on the health system. Conclusions: Our IFR estimate is based on data and does not rely on extrapolating models. This estimate sets a baseline value with which future medications and treatment protocols may be confronted.
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spelling pubmed-83580852021-08-12 A Bayesian estimate of the early COVID-19 infection fatality ratio in Brazil based on a random seroprevalence survey Marra, Valerio Quartin, Miguel Int J Infect Dis Article Background:A number of estimates of the infection fatality ratio (IFR) of SARS-CoV-2 in different countries have been published. In Brazil, the fragile political situation, together with socioeconomic and ethnic diversity, could result in substantially different IFR estimates. Methods:We infer the IFR in Brazil in 2020 by combining three datasets. We compute the prevalence via the population-based seroprevalence survey, EPICOVID19-BR. For the fatalities we obtain the absolute number using the public Painel Coronavírus dataset and the age-relative number using the public SIVEP-Gripe dataset. The time delay between the development of antibodies and subsequent fatality is estimated via the SIVEP-Gripe dataset. We obtain the IFR for each survey stage and 27 federal states. We include the effect of fading IgG antibody levels by marginalizing over the test detectability time window. Results:We infer a country-wide average IFR (maximum posterior and 95% CI) of 1.03% (0.88–1.22%) and age-specific IFRs of 0.032% (0.023–0.041%) [< 30 years], 0.22% (0.18–0.27%) [30–49 years], 1.2% (1.0–1.5%) [50–69 years], and 3.0% (2.4–3.9%) [[Formula: see text] 70 years]. We find that the fatality ratio in the country increased significantly at the end of June 2020, likely due to the increased strain on the health system. Conclusions: Our IFR estimate is based on data and does not rely on extrapolating models. This estimate sets a baseline value with which future medications and treatment protocols may be confronted. The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. 2021-10 2021-08-12 /pmc/articles/PMC8358085/ /pubmed/34390858 http://dx.doi.org/10.1016/j.ijid.2021.08.016 Text en © 2021 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Marra, Valerio
Quartin, Miguel
A Bayesian estimate of the early COVID-19 infection fatality ratio in Brazil based on a random seroprevalence survey
title A Bayesian estimate of the early COVID-19 infection fatality ratio in Brazil based on a random seroprevalence survey
title_full A Bayesian estimate of the early COVID-19 infection fatality ratio in Brazil based on a random seroprevalence survey
title_fullStr A Bayesian estimate of the early COVID-19 infection fatality ratio in Brazil based on a random seroprevalence survey
title_full_unstemmed A Bayesian estimate of the early COVID-19 infection fatality ratio in Brazil based on a random seroprevalence survey
title_short A Bayesian estimate of the early COVID-19 infection fatality ratio in Brazil based on a random seroprevalence survey
title_sort bayesian estimate of the early covid-19 infection fatality ratio in brazil based on a random seroprevalence survey
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8358085/
https://www.ncbi.nlm.nih.gov/pubmed/34390858
http://dx.doi.org/10.1016/j.ijid.2021.08.016
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