Cargando…

Q-Force: Quantum Mechanically Augmented Molecular Force Fields

[Image: see text] The quality of molecular dynamics simulations strongly depends on the accuracy of the underlying force fields (FFs) that determine all intra- and intermolecular interactions of the system. Commonly, transferable FF parameters are determined based on a representative set of small mo...

Descripción completa

Detalles Bibliográficos
Autores principales: Sami, Selim, Menger, Maximilian F.S.J, Faraji, Shirin, Broer, Ria, Havenith, Remco W. A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8359013/
https://www.ncbi.nlm.nih.gov/pubmed/34251194
http://dx.doi.org/10.1021/acs.jctc.1c00195
_version_ 1783737457103077376
author Sami, Selim
Menger, Maximilian F.S.J
Faraji, Shirin
Broer, Ria
Havenith, Remco W. A.
author_facet Sami, Selim
Menger, Maximilian F.S.J
Faraji, Shirin
Broer, Ria
Havenith, Remco W. A.
author_sort Sami, Selim
collection PubMed
description [Image: see text] The quality of molecular dynamics simulations strongly depends on the accuracy of the underlying force fields (FFs) that determine all intra- and intermolecular interactions of the system. Commonly, transferable FF parameters are determined based on a representative set of small molecules. However, such an approach sacrifices accuracy in favor of generality. In this work, an open-source and automated toolkit named Q-Force is presented, which augments these transferable FFs with molecule-specific bonded parameters and atomic charges that are derived from quantum mechanical (QM) calculations. The molecular fragmentation procedure allows treatment of large molecules (>200 atoms) with a low computational cost. The generated Q-Force FFs can be used at the same computational cost as transferable FFs, but with improved accuracy: We demonstrate this for the vibrational properties on a set of small molecules and for the potential energy surface on a complex molecule (186 atoms) with photovoltaic applications. Overall, the accuracy, user-friendliness, and minimal computational overhead of the Q-Force protocol make it widely applicable for atomistic molecular dynamics simulations.
format Online
Article
Text
id pubmed-8359013
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-83590132021-08-13 Q-Force: Quantum Mechanically Augmented Molecular Force Fields Sami, Selim Menger, Maximilian F.S.J Faraji, Shirin Broer, Ria Havenith, Remco W. A. J Chem Theory Comput [Image: see text] The quality of molecular dynamics simulations strongly depends on the accuracy of the underlying force fields (FFs) that determine all intra- and intermolecular interactions of the system. Commonly, transferable FF parameters are determined based on a representative set of small molecules. However, such an approach sacrifices accuracy in favor of generality. In this work, an open-source and automated toolkit named Q-Force is presented, which augments these transferable FFs with molecule-specific bonded parameters and atomic charges that are derived from quantum mechanical (QM) calculations. The molecular fragmentation procedure allows treatment of large molecules (>200 atoms) with a low computational cost. The generated Q-Force FFs can be used at the same computational cost as transferable FFs, but with improved accuracy: We demonstrate this for the vibrational properties on a set of small molecules and for the potential energy surface on a complex molecule (186 atoms) with photovoltaic applications. Overall, the accuracy, user-friendliness, and minimal computational overhead of the Q-Force protocol make it widely applicable for atomistic molecular dynamics simulations. American Chemical Society 2021-07-12 2021-08-10 /pmc/articles/PMC8359013/ /pubmed/34251194 http://dx.doi.org/10.1021/acs.jctc.1c00195 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Sami, Selim
Menger, Maximilian F.S.J
Faraji, Shirin
Broer, Ria
Havenith, Remco W. A.
Q-Force: Quantum Mechanically Augmented Molecular Force Fields
title Q-Force: Quantum Mechanically Augmented Molecular Force Fields
title_full Q-Force: Quantum Mechanically Augmented Molecular Force Fields
title_fullStr Q-Force: Quantum Mechanically Augmented Molecular Force Fields
title_full_unstemmed Q-Force: Quantum Mechanically Augmented Molecular Force Fields
title_short Q-Force: Quantum Mechanically Augmented Molecular Force Fields
title_sort q-force: quantum mechanically augmented molecular force fields
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8359013/
https://www.ncbi.nlm.nih.gov/pubmed/34251194
http://dx.doi.org/10.1021/acs.jctc.1c00195
work_keys_str_mv AT samiselim qforcequantummechanicallyaugmentedmolecularforcefields
AT mengermaximilianfsj qforcequantummechanicallyaugmentedmolecularforcefields
AT farajishirin qforcequantummechanicallyaugmentedmolecularforcefields
AT broerria qforcequantummechanicallyaugmentedmolecularforcefields
AT havenithremcowa qforcequantummechanicallyaugmentedmolecularforcefields