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Q-Force: Quantum Mechanically Augmented Molecular Force Fields
[Image: see text] The quality of molecular dynamics simulations strongly depends on the accuracy of the underlying force fields (FFs) that determine all intra- and intermolecular interactions of the system. Commonly, transferable FF parameters are determined based on a representative set of small mo...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8359013/ https://www.ncbi.nlm.nih.gov/pubmed/34251194 http://dx.doi.org/10.1021/acs.jctc.1c00195 |
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author | Sami, Selim Menger, Maximilian F.S.J Faraji, Shirin Broer, Ria Havenith, Remco W. A. |
author_facet | Sami, Selim Menger, Maximilian F.S.J Faraji, Shirin Broer, Ria Havenith, Remco W. A. |
author_sort | Sami, Selim |
collection | PubMed |
description | [Image: see text] The quality of molecular dynamics simulations strongly depends on the accuracy of the underlying force fields (FFs) that determine all intra- and intermolecular interactions of the system. Commonly, transferable FF parameters are determined based on a representative set of small molecules. However, such an approach sacrifices accuracy in favor of generality. In this work, an open-source and automated toolkit named Q-Force is presented, which augments these transferable FFs with molecule-specific bonded parameters and atomic charges that are derived from quantum mechanical (QM) calculations. The molecular fragmentation procedure allows treatment of large molecules (>200 atoms) with a low computational cost. The generated Q-Force FFs can be used at the same computational cost as transferable FFs, but with improved accuracy: We demonstrate this for the vibrational properties on a set of small molecules and for the potential energy surface on a complex molecule (186 atoms) with photovoltaic applications. Overall, the accuracy, user-friendliness, and minimal computational overhead of the Q-Force protocol make it widely applicable for atomistic molecular dynamics simulations. |
format | Online Article Text |
id | pubmed-8359013 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-83590132021-08-13 Q-Force: Quantum Mechanically Augmented Molecular Force Fields Sami, Selim Menger, Maximilian F.S.J Faraji, Shirin Broer, Ria Havenith, Remco W. A. J Chem Theory Comput [Image: see text] The quality of molecular dynamics simulations strongly depends on the accuracy of the underlying force fields (FFs) that determine all intra- and intermolecular interactions of the system. Commonly, transferable FF parameters are determined based on a representative set of small molecules. However, such an approach sacrifices accuracy in favor of generality. In this work, an open-source and automated toolkit named Q-Force is presented, which augments these transferable FFs with molecule-specific bonded parameters and atomic charges that are derived from quantum mechanical (QM) calculations. The molecular fragmentation procedure allows treatment of large molecules (>200 atoms) with a low computational cost. The generated Q-Force FFs can be used at the same computational cost as transferable FFs, but with improved accuracy: We demonstrate this for the vibrational properties on a set of small molecules and for the potential energy surface on a complex molecule (186 atoms) with photovoltaic applications. Overall, the accuracy, user-friendliness, and minimal computational overhead of the Q-Force protocol make it widely applicable for atomistic molecular dynamics simulations. American Chemical Society 2021-07-12 2021-08-10 /pmc/articles/PMC8359013/ /pubmed/34251194 http://dx.doi.org/10.1021/acs.jctc.1c00195 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Sami, Selim Menger, Maximilian F.S.J Faraji, Shirin Broer, Ria Havenith, Remco W. A. Q-Force: Quantum Mechanically Augmented Molecular Force Fields |
title | Q-Force: Quantum Mechanically Augmented Molecular
Force Fields |
title_full | Q-Force: Quantum Mechanically Augmented Molecular
Force Fields |
title_fullStr | Q-Force: Quantum Mechanically Augmented Molecular
Force Fields |
title_full_unstemmed | Q-Force: Quantum Mechanically Augmented Molecular
Force Fields |
title_short | Q-Force: Quantum Mechanically Augmented Molecular
Force Fields |
title_sort | q-force: quantum mechanically augmented molecular
force fields |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8359013/ https://www.ncbi.nlm.nih.gov/pubmed/34251194 http://dx.doi.org/10.1021/acs.jctc.1c00195 |
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