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Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats

The application of metabarcoding to environmental and invertebrate‐derived DNA (eDNA and iDNA) is a new and increasingly applied method for monitoring biodiversity across a diverse range of habitats. This approach is particularly promising for sampling in the biodiverse humid tropics, where rapid la...

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Autores principales: Drinkwater, Rosie, Jucker, Tommaso, Potter, Joshua H. T., Swinfield, Tom, Coomes, David A., Slade, Eleanor M., Gilbert, M. Thomas P., Lewis, Owen T., Bernard, Henry, Struebig, Matthew J., Clare, Elizabeth L., Rossiter, Stephen J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8359290/
https://www.ncbi.nlm.nih.gov/pubmed/33171014
http://dx.doi.org/10.1111/mec.15724
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author Drinkwater, Rosie
Jucker, Tommaso
Potter, Joshua H. T.
Swinfield, Tom
Coomes, David A.
Slade, Eleanor M.
Gilbert, M. Thomas P.
Lewis, Owen T.
Bernard, Henry
Struebig, Matthew J.
Clare, Elizabeth L.
Rossiter, Stephen J.
author_facet Drinkwater, Rosie
Jucker, Tommaso
Potter, Joshua H. T.
Swinfield, Tom
Coomes, David A.
Slade, Eleanor M.
Gilbert, M. Thomas P.
Lewis, Owen T.
Bernard, Henry
Struebig, Matthew J.
Clare, Elizabeth L.
Rossiter, Stephen J.
author_sort Drinkwater, Rosie
collection PubMed
description The application of metabarcoding to environmental and invertebrate‐derived DNA (eDNA and iDNA) is a new and increasingly applied method for monitoring biodiversity across a diverse range of habitats. This approach is particularly promising for sampling in the biodiverse humid tropics, where rapid land‐use change for agriculture means there is a growing need to understand the conservation value of the remaining mosaic and degraded landscapes. Here we use iDNA from blood‐feeding leeches (Haemadipsa picta) to assess differences in mammalian diversity across a gradient of forest degradation in Sabah, Malaysian Borneo. We screened 557 individual leeches for mammal DNA by targeting fragments of the 16S rRNA gene and detected 14 mammalian genera. We recorded lower mammal diversity in the most heavily degraded forest compared to higher quality twice logged forest. Although the accumulation curves of diversity estimates were comparable across these habitat types, diversity was higher in twice logged forest, with more taxa of conservation concern. In addition, our analysis revealed differences between the community recorded in the heavily logged forest and that of the twice logged forest. By revealing differences in mammal diversity across a human‐modified tropical landscape, our study demonstrates the value of iDNA as a noninvasive biomonitoring approach in conservation assessments.
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spelling pubmed-83592902021-08-17 Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats Drinkwater, Rosie Jucker, Tommaso Potter, Joshua H. T. Swinfield, Tom Coomes, David A. Slade, Eleanor M. Gilbert, M. Thomas P. Lewis, Owen T. Bernard, Henry Struebig, Matthew J. Clare, Elizabeth L. Rossiter, Stephen J. Mol Ecol METHODOLOGY AND COMPARISON WITH CONVENTIONAL METHODS The application of metabarcoding to environmental and invertebrate‐derived DNA (eDNA and iDNA) is a new and increasingly applied method for monitoring biodiversity across a diverse range of habitats. This approach is particularly promising for sampling in the biodiverse humid tropics, where rapid land‐use change for agriculture means there is a growing need to understand the conservation value of the remaining mosaic and degraded landscapes. Here we use iDNA from blood‐feeding leeches (Haemadipsa picta) to assess differences in mammalian diversity across a gradient of forest degradation in Sabah, Malaysian Borneo. We screened 557 individual leeches for mammal DNA by targeting fragments of the 16S rRNA gene and detected 14 mammalian genera. We recorded lower mammal diversity in the most heavily degraded forest compared to higher quality twice logged forest. Although the accumulation curves of diversity estimates were comparable across these habitat types, diversity was higher in twice logged forest, with more taxa of conservation concern. In addition, our analysis revealed differences between the community recorded in the heavily logged forest and that of the twice logged forest. By revealing differences in mammal diversity across a human‐modified tropical landscape, our study demonstrates the value of iDNA as a noninvasive biomonitoring approach in conservation assessments. John Wiley and Sons Inc. 2020-11-27 2021-07 /pmc/articles/PMC8359290/ /pubmed/33171014 http://dx.doi.org/10.1111/mec.15724 Text en © 2020 The Authors. Molecular Ecology published by John Wiley & Sons Ltd https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle METHODOLOGY AND COMPARISON WITH CONVENTIONAL METHODS
Drinkwater, Rosie
Jucker, Tommaso
Potter, Joshua H. T.
Swinfield, Tom
Coomes, David A.
Slade, Eleanor M.
Gilbert, M. Thomas P.
Lewis, Owen T.
Bernard, Henry
Struebig, Matthew J.
Clare, Elizabeth L.
Rossiter, Stephen J.
Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
title Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
title_full Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
title_fullStr Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
title_full_unstemmed Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
title_short Leech blood‐meal invertebrate‐derived DNA reveals differences in Bornean mammal diversity across habitats
title_sort leech blood‐meal invertebrate‐derived dna reveals differences in bornean mammal diversity across habitats
topic METHODOLOGY AND COMPARISON WITH CONVENTIONAL METHODS
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8359290/
https://www.ncbi.nlm.nih.gov/pubmed/33171014
http://dx.doi.org/10.1111/mec.15724
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