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DNA sequence and community structure diversity of multi-year soil fungi in Grape of Xinjiang

This study is designed to understand the community structure and diversity of fungi in the rhizosphere soil of grape. As the sample for this study, the rhizosphere soil of Crimson seedless grape with different planting years was collected from Shihezi in Xinjiang to carry out high-throughput sequenc...

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Autores principales: Xue, Feng, Liu, Tong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8361149/
https://www.ncbi.nlm.nih.gov/pubmed/34385541
http://dx.doi.org/10.1038/s41598-021-95854-2
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author Xue, Feng
Liu, Tong
author_facet Xue, Feng
Liu, Tong
author_sort Xue, Feng
collection PubMed
description This study is designed to understand the community structure and diversity of fungi in the rhizosphere soil of grape. As the sample for this study, the rhizosphere soil of Crimson seedless grape with different planting years was collected from Shihezi in Xinjiang to carry out high-throughput sequencing, by which the complete sequence of soil fungi DNA was identified, and accordingly, the richness and diversity index of fungi were determined. The results showed that the dominant phyla of fungi in the grape rhizosphere soil with different planting years were Ascomycota and Basidiomycota, and the dominant classes of fungi were Sordariomycetes and Dothideomycetes. Soil organic matter, total potassium, total nitrogen and available phosphorus were the main soil fertility factors affecting the abundance and diversity of soil fungal communities, among which soil organic matter had the most significant influence. In addition, the fungal diversity and richness were highest in the middle layer (20–35 cm) of the grape rhizosphere soil with 12 planting years and lowest in the lower layer (35–50 cm) of the grape rhizosphere soil with 5 planting years. Linear discriminant analysis suggested that there were more biomarkers in the vineyard rhizosphere soil with 10 planting years, which meant there were more fungal communities with significant difference in the soil, especially in the middle layer (20–35). The results of this study can provide data reference and theoretical basis for improving vineyard soil quality, evaluating soil microecological effects and improving ecological environment of vineyard soil.
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spelling pubmed-83611492021-08-17 DNA sequence and community structure diversity of multi-year soil fungi in Grape of Xinjiang Xue, Feng Liu, Tong Sci Rep Article This study is designed to understand the community structure and diversity of fungi in the rhizosphere soil of grape. As the sample for this study, the rhizosphere soil of Crimson seedless grape with different planting years was collected from Shihezi in Xinjiang to carry out high-throughput sequencing, by which the complete sequence of soil fungi DNA was identified, and accordingly, the richness and diversity index of fungi were determined. The results showed that the dominant phyla of fungi in the grape rhizosphere soil with different planting years were Ascomycota and Basidiomycota, and the dominant classes of fungi were Sordariomycetes and Dothideomycetes. Soil organic matter, total potassium, total nitrogen and available phosphorus were the main soil fertility factors affecting the abundance and diversity of soil fungal communities, among which soil organic matter had the most significant influence. In addition, the fungal diversity and richness were highest in the middle layer (20–35 cm) of the grape rhizosphere soil with 12 planting years and lowest in the lower layer (35–50 cm) of the grape rhizosphere soil with 5 planting years. Linear discriminant analysis suggested that there were more biomarkers in the vineyard rhizosphere soil with 10 planting years, which meant there were more fungal communities with significant difference in the soil, especially in the middle layer (20–35). The results of this study can provide data reference and theoretical basis for improving vineyard soil quality, evaluating soil microecological effects and improving ecological environment of vineyard soil. Nature Publishing Group UK 2021-08-12 /pmc/articles/PMC8361149/ /pubmed/34385541 http://dx.doi.org/10.1038/s41598-021-95854-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Xue, Feng
Liu, Tong
DNA sequence and community structure diversity of multi-year soil fungi in Grape of Xinjiang
title DNA sequence and community structure diversity of multi-year soil fungi in Grape of Xinjiang
title_full DNA sequence and community structure diversity of multi-year soil fungi in Grape of Xinjiang
title_fullStr DNA sequence and community structure diversity of multi-year soil fungi in Grape of Xinjiang
title_full_unstemmed DNA sequence and community structure diversity of multi-year soil fungi in Grape of Xinjiang
title_short DNA sequence and community structure diversity of multi-year soil fungi in Grape of Xinjiang
title_sort dna sequence and community structure diversity of multi-year soil fungi in grape of xinjiang
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8361149/
https://www.ncbi.nlm.nih.gov/pubmed/34385541
http://dx.doi.org/10.1038/s41598-021-95854-2
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