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de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration
Earthworms have remarkable ability to regenerate its tail and head region. However the list of genes expressed in this regeneration process has been less explored baring a few species. The current study involves the de novo transcriptome sequencing of intact tail and regenerating tail (15 day post a...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8361223/ https://www.ncbi.nlm.nih.gov/pubmed/34409173 http://dx.doi.org/10.1016/j.bbrep.2021.101092 |
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author | Sahu, Ranjan Sahu, Sanjat Kumar Nishank, Sudhansu Sekhar |
author_facet | Sahu, Ranjan Sahu, Sanjat Kumar Nishank, Sudhansu Sekhar |
author_sort | Sahu, Ranjan |
collection | PubMed |
description | Earthworms have remarkable ability to regenerate its tail and head region. However the list of genes expressed in this regeneration process has been less explored baring a few species. The current study involves the de novo transcriptome sequencing of intact tail and regenerating tail (15 day post amputation) of earthworms belonging to two different genera Lampito mauritii (Kinberg, 1867) and Drawida calebi (Gates, 1945). This study contains one de-novo and one reference based transcriptome analysis each from one genus of two earthworm genera. From a total of 119.92 million (150 × 2) reads, 112.95 million high quality adapter free reads were utilized in analysis. Assembly of high-quality reads was performed separately for Lampito mauritii (LM sample) and Drawida calebi (DC sample) that resulted in 66368 and 1,61,289 transcripts respectively. About 25.21% of transcripts were functionally annotated for DC sample and 38.27% for LM samples against Annelida sequences. A total of 239 genes were expressed exclusively in regenerated tissue compared to intact sample in DC whereas about 241 genes were exclusively expressed in regenerated tissue of LM compared to its intact sample. Majority of genes in Drawida and Lampito were dedicated to immune response, maintenance of cytoskeleton, resisting oxidative stress and promoting neuronal regeneration for cell-cell communication during tail regeneration. |
format | Online Article Text |
id | pubmed-8361223 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-83612232021-08-17 de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration Sahu, Ranjan Sahu, Sanjat Kumar Nishank, Sudhansu Sekhar Biochem Biophys Rep Research Article Earthworms have remarkable ability to regenerate its tail and head region. However the list of genes expressed in this regeneration process has been less explored baring a few species. The current study involves the de novo transcriptome sequencing of intact tail and regenerating tail (15 day post amputation) of earthworms belonging to two different genera Lampito mauritii (Kinberg, 1867) and Drawida calebi (Gates, 1945). This study contains one de-novo and one reference based transcriptome analysis each from one genus of two earthworm genera. From a total of 119.92 million (150 × 2) reads, 112.95 million high quality adapter free reads were utilized in analysis. Assembly of high-quality reads was performed separately for Lampito mauritii (LM sample) and Drawida calebi (DC sample) that resulted in 66368 and 1,61,289 transcripts respectively. About 25.21% of transcripts were functionally annotated for DC sample and 38.27% for LM samples against Annelida sequences. A total of 239 genes were expressed exclusively in regenerated tissue compared to intact sample in DC whereas about 241 genes were exclusively expressed in regenerated tissue of LM compared to its intact sample. Majority of genes in Drawida and Lampito were dedicated to immune response, maintenance of cytoskeleton, resisting oxidative stress and promoting neuronal regeneration for cell-cell communication during tail regeneration. Elsevier 2021-08-09 /pmc/articles/PMC8361223/ /pubmed/34409173 http://dx.doi.org/10.1016/j.bbrep.2021.101092 Text en © 2021 Published by Elsevier B.V. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Sahu, Ranjan Sahu, Sanjat Kumar Nishank, Sudhansu Sekhar de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration |
title | de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration |
title_full | de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration |
title_fullStr | de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration |
title_full_unstemmed | de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration |
title_short | de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration |
title_sort | de novo transcriptome profile of two earthworms lampito mauritii and drawida calebi during regeneration |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8361223/ https://www.ncbi.nlm.nih.gov/pubmed/34409173 http://dx.doi.org/10.1016/j.bbrep.2021.101092 |
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