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de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration

Earthworms have remarkable ability to regenerate its tail and head region. However the list of genes expressed in this regeneration process has been less explored baring a few species. The current study involves the de novo transcriptome sequencing of intact tail and regenerating tail (15 day post a...

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Autores principales: Sahu, Ranjan, Sahu, Sanjat Kumar, Nishank, Sudhansu Sekhar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8361223/
https://www.ncbi.nlm.nih.gov/pubmed/34409173
http://dx.doi.org/10.1016/j.bbrep.2021.101092
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author Sahu, Ranjan
Sahu, Sanjat Kumar
Nishank, Sudhansu Sekhar
author_facet Sahu, Ranjan
Sahu, Sanjat Kumar
Nishank, Sudhansu Sekhar
author_sort Sahu, Ranjan
collection PubMed
description Earthworms have remarkable ability to regenerate its tail and head region. However the list of genes expressed in this regeneration process has been less explored baring a few species. The current study involves the de novo transcriptome sequencing of intact tail and regenerating tail (15 day post amputation) of earthworms belonging to two different genera Lampito mauritii (Kinberg, 1867) and Drawida calebi (Gates, 1945). This study contains one de-novo and one reference based transcriptome analysis each from one genus of two earthworm genera. From a total of 119.92 million (150 × 2) reads, 112.95 million high quality adapter free reads were utilized in analysis. Assembly of high-quality reads was performed separately for Lampito mauritii (LM sample) and Drawida calebi (DC sample) that resulted in 66368 and 1,61,289 transcripts respectively. About 25.21% of transcripts were functionally annotated for DC sample and 38.27% for LM samples against Annelida sequences. A total of 239 genes were expressed exclusively in regenerated tissue compared to intact sample in DC whereas about 241 genes were exclusively expressed in regenerated tissue of LM compared to its intact sample. Majority of genes in Drawida and Lampito were dedicated to immune response, maintenance of cytoskeleton, resisting oxidative stress and promoting neuronal regeneration for cell-cell communication during tail regeneration.
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spelling pubmed-83612232021-08-17 de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration Sahu, Ranjan Sahu, Sanjat Kumar Nishank, Sudhansu Sekhar Biochem Biophys Rep Research Article Earthworms have remarkable ability to regenerate its tail and head region. However the list of genes expressed in this regeneration process has been less explored baring a few species. The current study involves the de novo transcriptome sequencing of intact tail and regenerating tail (15 day post amputation) of earthworms belonging to two different genera Lampito mauritii (Kinberg, 1867) and Drawida calebi (Gates, 1945). This study contains one de-novo and one reference based transcriptome analysis each from one genus of two earthworm genera. From a total of 119.92 million (150 × 2) reads, 112.95 million high quality adapter free reads were utilized in analysis. Assembly of high-quality reads was performed separately for Lampito mauritii (LM sample) and Drawida calebi (DC sample) that resulted in 66368 and 1,61,289 transcripts respectively. About 25.21% of transcripts were functionally annotated for DC sample and 38.27% for LM samples against Annelida sequences. A total of 239 genes were expressed exclusively in regenerated tissue compared to intact sample in DC whereas about 241 genes were exclusively expressed in regenerated tissue of LM compared to its intact sample. Majority of genes in Drawida and Lampito were dedicated to immune response, maintenance of cytoskeleton, resisting oxidative stress and promoting neuronal regeneration for cell-cell communication during tail regeneration. Elsevier 2021-08-09 /pmc/articles/PMC8361223/ /pubmed/34409173 http://dx.doi.org/10.1016/j.bbrep.2021.101092 Text en © 2021 Published by Elsevier B.V. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Sahu, Ranjan
Sahu, Sanjat Kumar
Nishank, Sudhansu Sekhar
de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration
title de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration
title_full de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration
title_fullStr de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration
title_full_unstemmed de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration
title_short de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration
title_sort de novo transcriptome profile of two earthworms lampito mauritii and drawida calebi during regeneration
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8361223/
https://www.ncbi.nlm.nih.gov/pubmed/34409173
http://dx.doi.org/10.1016/j.bbrep.2021.101092
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AT nishanksudhansusekhar denovotranscriptomeprofileoftwoearthwormslampitomauritiianddrawidacalebiduringregeneration