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COVID-19 detection with traditional and deep features on cough acoustic signals

The COVID-19 epidemic, in which millions of people suffer, has affected the whole world in a short time. This virus, which has a high rate of transmission, directly affects the respiratory system of people. While symptoms such as difficulty in breathing, cough, and fever are common, hospitalization...

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Detalles Bibliográficos
Autores principales: Erdoğan, Yunus Emre, Narin, Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8364172/
https://www.ncbi.nlm.nih.gov/pubmed/34416571
http://dx.doi.org/10.1016/j.compbiomed.2021.104765
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author Erdoğan, Yunus Emre
Narin, Ali
author_facet Erdoğan, Yunus Emre
Narin, Ali
author_sort Erdoğan, Yunus Emre
collection PubMed
description The COVID-19 epidemic, in which millions of people suffer, has affected the whole world in a short time. This virus, which has a high rate of transmission, directly affects the respiratory system of people. While symptoms such as difficulty in breathing, cough, and fever are common, hospitalization and fatal consequences can be seen in progressive situations. For this reason, the most important issue in combating the epidemic is to detect COVID-19(+) early and isolate those with COVID-19(+) from other people. In addition to the RT-PCR test, those with COVID-19(+) can be detected with imaging methods. In this study, it was aimed to detect COVID-19(+) patients with cough acoustic data, which is one of the important symptoms. Based on these data, features were obtained from traditional feature extraction methods using empirical mode decomposition (EMD) and discrete wavelet transform (DWT). Deep features were also obtained using pre-trained ResNet50 and pre-trained MobileNet models. Feature selection was applied to all obtained features with the ReliefF algorithm. In this case, the highest 98.4% accuracy and 98.6% F1-score values were obtained by selecting the EMD + DWT features using ReliefF. In another study in which deep features were used, features obtained from ResNet50 and MobileNet using scalogram images were used. For the features selected using the ReliefF algorithm, the highest performance was found with support vector machines-cubic as 97.8% accuracy and 98.0% F1-score. It has been determined that the features obtained by traditional feature approaches show higher performance than deep features. Among the chaotic measurements, the approximate entropy measurement was determined to be the highest distinguishing feature. According to the results, a highly successful study is presented with cough acoustic data that can easily be obtained from mobile and computer-based applications. We anticipate that this study will be useful as a decision support system in this epidemic period, when it is important to correctly identify even one person.
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spelling pubmed-83641722021-08-15 COVID-19 detection with traditional and deep features on cough acoustic signals Erdoğan, Yunus Emre Narin, Ali Comput Biol Med Article The COVID-19 epidemic, in which millions of people suffer, has affected the whole world in a short time. This virus, which has a high rate of transmission, directly affects the respiratory system of people. While symptoms such as difficulty in breathing, cough, and fever are common, hospitalization and fatal consequences can be seen in progressive situations. For this reason, the most important issue in combating the epidemic is to detect COVID-19(+) early and isolate those with COVID-19(+) from other people. In addition to the RT-PCR test, those with COVID-19(+) can be detected with imaging methods. In this study, it was aimed to detect COVID-19(+) patients with cough acoustic data, which is one of the important symptoms. Based on these data, features were obtained from traditional feature extraction methods using empirical mode decomposition (EMD) and discrete wavelet transform (DWT). Deep features were also obtained using pre-trained ResNet50 and pre-trained MobileNet models. Feature selection was applied to all obtained features with the ReliefF algorithm. In this case, the highest 98.4% accuracy and 98.6% F1-score values were obtained by selecting the EMD + DWT features using ReliefF. In another study in which deep features were used, features obtained from ResNet50 and MobileNet using scalogram images were used. For the features selected using the ReliefF algorithm, the highest performance was found with support vector machines-cubic as 97.8% accuracy and 98.0% F1-score. It has been determined that the features obtained by traditional feature approaches show higher performance than deep features. Among the chaotic measurements, the approximate entropy measurement was determined to be the highest distinguishing feature. According to the results, a highly successful study is presented with cough acoustic data that can easily be obtained from mobile and computer-based applications. We anticipate that this study will be useful as a decision support system in this epidemic period, when it is important to correctly identify even one person. Elsevier Ltd. 2021-09 2021-08-14 /pmc/articles/PMC8364172/ /pubmed/34416571 http://dx.doi.org/10.1016/j.compbiomed.2021.104765 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Erdoğan, Yunus Emre
Narin, Ali
COVID-19 detection with traditional and deep features on cough acoustic signals
title COVID-19 detection with traditional and deep features on cough acoustic signals
title_full COVID-19 detection with traditional and deep features on cough acoustic signals
title_fullStr COVID-19 detection with traditional and deep features on cough acoustic signals
title_full_unstemmed COVID-19 detection with traditional and deep features on cough acoustic signals
title_short COVID-19 detection with traditional and deep features on cough acoustic signals
title_sort covid-19 detection with traditional and deep features on cough acoustic signals
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8364172/
https://www.ncbi.nlm.nih.gov/pubmed/34416571
http://dx.doi.org/10.1016/j.compbiomed.2021.104765
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