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Real-time label-free detection of DNA hybridization using a functionalized graphene field effect transistor: a theoretical study

Detection of DNA hybridization with high sensitivity and accuracy plays a major role in clinical diagnosis and treatment. Despite intense experimental studies of graphene field effect transistor as DNA hybridization detector, the mechanism of detection and changes in the electrical properties of the...

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Autores principales: Bagherzadeh-Nobari, Sheida, Kalantarinejad, Reza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8365298/
https://www.ncbi.nlm.nih.gov/pubmed/34421338
http://dx.doi.org/10.1007/s11051-021-05295-1
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author Bagherzadeh-Nobari, Sheida
Kalantarinejad, Reza
author_facet Bagherzadeh-Nobari, Sheida
Kalantarinejad, Reza
author_sort Bagherzadeh-Nobari, Sheida
collection PubMed
description Detection of DNA hybridization with high sensitivity and accuracy plays a major role in clinical diagnosis and treatment. Despite intense experimental studies of graphene field effect transistor as DNA hybridization detector, the mechanism of detection and changes in the electrical properties of the device is not investigated in detail. To this end, we have investigated an armchair graphene nanoribbon (AGNR) interconnected between gold electrodes as a detector of DNA hybridization. Using non-equilibrium Green’s function method and density functional theory, the effect of 1-pyrenebutanoic acid succinimidyl ester (PBASE) linker, probe, and target DNA on the electrical properties of the device has been investigated at zero bias voltage. The results show that, after functionalization of AGNR with PBASE, the conductance of the device increases while functionalization with probe and target DNA leads to a decrease in conductance. The changes in the projected density of states on the AGNR and transmission around Fermi energy are the reason for the change in conductance of the system. In all cases, both charge transfer and electrostatic gating are responsible for the change in the electrical properties of the system. The results show that our device detects DNA hybridization with a sensitivity of 10% at zero bias voltage, and by applying a suitable gate voltage, it can show higher sensitivity. GRAPHICAL ABSTRACT: [Image: see text]
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spelling pubmed-83652982021-08-16 Real-time label-free detection of DNA hybridization using a functionalized graphene field effect transistor: a theoretical study Bagherzadeh-Nobari, Sheida Kalantarinejad, Reza J Nanopart Res Research Paper Detection of DNA hybridization with high sensitivity and accuracy plays a major role in clinical diagnosis and treatment. Despite intense experimental studies of graphene field effect transistor as DNA hybridization detector, the mechanism of detection and changes in the electrical properties of the device is not investigated in detail. To this end, we have investigated an armchair graphene nanoribbon (AGNR) interconnected between gold electrodes as a detector of DNA hybridization. Using non-equilibrium Green’s function method and density functional theory, the effect of 1-pyrenebutanoic acid succinimidyl ester (PBASE) linker, probe, and target DNA on the electrical properties of the device has been investigated at zero bias voltage. The results show that, after functionalization of AGNR with PBASE, the conductance of the device increases while functionalization with probe and target DNA leads to a decrease in conductance. The changes in the projected density of states on the AGNR and transmission around Fermi energy are the reason for the change in conductance of the system. In all cases, both charge transfer and electrostatic gating are responsible for the change in the electrical properties of the system. The results show that our device detects DNA hybridization with a sensitivity of 10% at zero bias voltage, and by applying a suitable gate voltage, it can show higher sensitivity. GRAPHICAL ABSTRACT: [Image: see text] Springer Netherlands 2021-08-16 2021 /pmc/articles/PMC8365298/ /pubmed/34421338 http://dx.doi.org/10.1007/s11051-021-05295-1 Text en © The Author(s), under exclusive licence to Springer Nature B.V. 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Research Paper
Bagherzadeh-Nobari, Sheida
Kalantarinejad, Reza
Real-time label-free detection of DNA hybridization using a functionalized graphene field effect transistor: a theoretical study
title Real-time label-free detection of DNA hybridization using a functionalized graphene field effect transistor: a theoretical study
title_full Real-time label-free detection of DNA hybridization using a functionalized graphene field effect transistor: a theoretical study
title_fullStr Real-time label-free detection of DNA hybridization using a functionalized graphene field effect transistor: a theoretical study
title_full_unstemmed Real-time label-free detection of DNA hybridization using a functionalized graphene field effect transistor: a theoretical study
title_short Real-time label-free detection of DNA hybridization using a functionalized graphene field effect transistor: a theoretical study
title_sort real-time label-free detection of dna hybridization using a functionalized graphene field effect transistor: a theoretical study
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8365298/
https://www.ncbi.nlm.nih.gov/pubmed/34421338
http://dx.doi.org/10.1007/s11051-021-05295-1
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