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Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection

Agent‐based models (ABMs) are a powerful class of computational models widely used to simulate complex phenomena in many different application areas. However, one of the most critical aspects, poorly investigated in the literature, regards an important step of the model credibility assessment: solut...

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Autores principales: Curreli, Cristina, Pappalardo, Francesco, Russo, Giulia, Pennisi, Marzio, Kiagias, Dimitrios, Juarez, Miguel, Viceconti, Marco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8365724/
https://www.ncbi.nlm.nih.gov/pubmed/33899348
http://dx.doi.org/10.1002/cnm.3470
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author Curreli, Cristina
Pappalardo, Francesco
Russo, Giulia
Pennisi, Marzio
Kiagias, Dimitrios
Juarez, Miguel
Viceconti, Marco
author_facet Curreli, Cristina
Pappalardo, Francesco
Russo, Giulia
Pennisi, Marzio
Kiagias, Dimitrios
Juarez, Miguel
Viceconti, Marco
author_sort Curreli, Cristina
collection PubMed
description Agent‐based models (ABMs) are a powerful class of computational models widely used to simulate complex phenomena in many different application areas. However, one of the most critical aspects, poorly investigated in the literature, regards an important step of the model credibility assessment: solution verification. This study overcomes this limitation by proposing a general verification framework for ABMs that aims at evaluating the numerical errors associated with the model. A step‐by‐step procedure, which consists of two main verification studies (deterministic and stochastic model verification), is described in detail and applied to a specific mission critical scenario: the quantification of the numerical approximation error for UISS‐TB, an ABM of the human immune system developed to predict the progression of pulmonary tuberculosis. Results provide indications on the possibility to use the proposed model verification workflow to systematically identify and quantify numerical approximation errors associated with UISS‐TB and, in general, with any other ABMs.
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spelling pubmed-83657242021-08-23 Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection Curreli, Cristina Pappalardo, Francesco Russo, Giulia Pennisi, Marzio Kiagias, Dimitrios Juarez, Miguel Viceconti, Marco Int J Numer Method Biomed Eng Research Article ‐ Applications Agent‐based models (ABMs) are a powerful class of computational models widely used to simulate complex phenomena in many different application areas. However, one of the most critical aspects, poorly investigated in the literature, regards an important step of the model credibility assessment: solution verification. This study overcomes this limitation by proposing a general verification framework for ABMs that aims at evaluating the numerical errors associated with the model. A step‐by‐step procedure, which consists of two main verification studies (deterministic and stochastic model verification), is described in detail and applied to a specific mission critical scenario: the quantification of the numerical approximation error for UISS‐TB, an ABM of the human immune system developed to predict the progression of pulmonary tuberculosis. Results provide indications on the possibility to use the proposed model verification workflow to systematically identify and quantify numerical approximation errors associated with UISS‐TB and, in general, with any other ABMs. John Wiley & Sons, Inc. 2021-05-12 2021-07 /pmc/articles/PMC8365724/ /pubmed/33899348 http://dx.doi.org/10.1002/cnm.3470 Text en © 2021 The Authors. International Journal for Numerical Methods in Biomedical Engineering published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Article ‐ Applications
Curreli, Cristina
Pappalardo, Francesco
Russo, Giulia
Pennisi, Marzio
Kiagias, Dimitrios
Juarez, Miguel
Viceconti, Marco
Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection
title Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection
title_full Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection
title_fullStr Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection
title_full_unstemmed Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection
title_short Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection
title_sort verification of an agent‐based disease model of human mycobacterium tuberculosis infection
topic Research Article ‐ Applications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8365724/
https://www.ncbi.nlm.nih.gov/pubmed/33899348
http://dx.doi.org/10.1002/cnm.3470
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