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Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection
Agent‐based models (ABMs) are a powerful class of computational models widely used to simulate complex phenomena in many different application areas. However, one of the most critical aspects, poorly investigated in the literature, regards an important step of the model credibility assessment: solut...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8365724/ https://www.ncbi.nlm.nih.gov/pubmed/33899348 http://dx.doi.org/10.1002/cnm.3470 |
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author | Curreli, Cristina Pappalardo, Francesco Russo, Giulia Pennisi, Marzio Kiagias, Dimitrios Juarez, Miguel Viceconti, Marco |
author_facet | Curreli, Cristina Pappalardo, Francesco Russo, Giulia Pennisi, Marzio Kiagias, Dimitrios Juarez, Miguel Viceconti, Marco |
author_sort | Curreli, Cristina |
collection | PubMed |
description | Agent‐based models (ABMs) are a powerful class of computational models widely used to simulate complex phenomena in many different application areas. However, one of the most critical aspects, poorly investigated in the literature, regards an important step of the model credibility assessment: solution verification. This study overcomes this limitation by proposing a general verification framework for ABMs that aims at evaluating the numerical errors associated with the model. A step‐by‐step procedure, which consists of two main verification studies (deterministic and stochastic model verification), is described in detail and applied to a specific mission critical scenario: the quantification of the numerical approximation error for UISS‐TB, an ABM of the human immune system developed to predict the progression of pulmonary tuberculosis. Results provide indications on the possibility to use the proposed model verification workflow to systematically identify and quantify numerical approximation errors associated with UISS‐TB and, in general, with any other ABMs. |
format | Online Article Text |
id | pubmed-8365724 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83657242021-08-23 Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection Curreli, Cristina Pappalardo, Francesco Russo, Giulia Pennisi, Marzio Kiagias, Dimitrios Juarez, Miguel Viceconti, Marco Int J Numer Method Biomed Eng Research Article ‐ Applications Agent‐based models (ABMs) are a powerful class of computational models widely used to simulate complex phenomena in many different application areas. However, one of the most critical aspects, poorly investigated in the literature, regards an important step of the model credibility assessment: solution verification. This study overcomes this limitation by proposing a general verification framework for ABMs that aims at evaluating the numerical errors associated with the model. A step‐by‐step procedure, which consists of two main verification studies (deterministic and stochastic model verification), is described in detail and applied to a specific mission critical scenario: the quantification of the numerical approximation error for UISS‐TB, an ABM of the human immune system developed to predict the progression of pulmonary tuberculosis. Results provide indications on the possibility to use the proposed model verification workflow to systematically identify and quantify numerical approximation errors associated with UISS‐TB and, in general, with any other ABMs. John Wiley & Sons, Inc. 2021-05-12 2021-07 /pmc/articles/PMC8365724/ /pubmed/33899348 http://dx.doi.org/10.1002/cnm.3470 Text en © 2021 The Authors. International Journal for Numerical Methods in Biomedical Engineering published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Article ‐ Applications Curreli, Cristina Pappalardo, Francesco Russo, Giulia Pennisi, Marzio Kiagias, Dimitrios Juarez, Miguel Viceconti, Marco Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection |
title | Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection |
title_full | Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection |
title_fullStr | Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection |
title_full_unstemmed | Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection |
title_short | Verification of an agent‐based disease model of human Mycobacterium tuberculosis infection |
title_sort | verification of an agent‐based disease model of human mycobacterium tuberculosis infection |
topic | Research Article ‐ Applications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8365724/ https://www.ncbi.nlm.nih.gov/pubmed/33899348 http://dx.doi.org/10.1002/cnm.3470 |
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