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Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation

BACKGROUND: Survival analysis is a cornerstone of medical research, enabling the assessment of clinical outcomes for disease progression and treatment efficiency. Despite its central importance, no commonly used spreadsheet software can handle survival analysis and there is no web server available f...

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Detalles Bibliográficos
Autores principales: Lánczky, András, Győrffy, Balázs
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367126/
https://www.ncbi.nlm.nih.gov/pubmed/34309564
http://dx.doi.org/10.2196/27633
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author Lánczky, András
Győrffy, Balázs
author_facet Lánczky, András
Győrffy, Balázs
author_sort Lánczky, András
collection PubMed
description BACKGROUND: Survival analysis is a cornerstone of medical research, enabling the assessment of clinical outcomes for disease progression and treatment efficiency. Despite its central importance, no commonly used spreadsheet software can handle survival analysis and there is no web server available for its computation. OBJECTIVE: Here, we introduce a web-based tool capable of performing univariate and multivariate Cox proportional hazards survival analysis using data generated by genomic, transcriptomic, proteomic, or metabolomic studies. METHODS: We implemented different methods to establish cut-off values for the trichotomization or dichotomization of continuous data. The false discovery rate is computed to correct for multiple hypothesis testing. A multivariate analysis option enables comparing omics data with clinical variables. RESULTS: We established a registration-free web-based survival analysis tool capable of performing univariate and multivariate survival analysis using any custom-generated data. CONCLUSIONS: This tool fills a gap and will be an invaluable contribution to basic medical and clinical research.
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spelling pubmed-83671262021-08-24 Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation Lánczky, András Győrffy, Balázs J Med Internet Res Original Paper BACKGROUND: Survival analysis is a cornerstone of medical research, enabling the assessment of clinical outcomes for disease progression and treatment efficiency. Despite its central importance, no commonly used spreadsheet software can handle survival analysis and there is no web server available for its computation. OBJECTIVE: Here, we introduce a web-based tool capable of performing univariate and multivariate Cox proportional hazards survival analysis using data generated by genomic, transcriptomic, proteomic, or metabolomic studies. METHODS: We implemented different methods to establish cut-off values for the trichotomization or dichotomization of continuous data. The false discovery rate is computed to correct for multiple hypothesis testing. A multivariate analysis option enables comparing omics data with clinical variables. RESULTS: We established a registration-free web-based survival analysis tool capable of performing univariate and multivariate survival analysis using any custom-generated data. CONCLUSIONS: This tool fills a gap and will be an invaluable contribution to basic medical and clinical research. JMIR Publications 2021-07-26 /pmc/articles/PMC8367126/ /pubmed/34309564 http://dx.doi.org/10.2196/27633 Text en ©András Lánczky, Balázs Győrffy. Originally published in the Journal of Medical Internet Research (https://www.jmir.org), 26.07.2021. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on https://www.jmir.org/, as well as this copyright and license information must be included.
spellingShingle Original Paper
Lánczky, András
Győrffy, Balázs
Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
title Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
title_full Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
title_fullStr Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
title_full_unstemmed Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
title_short Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
title_sort web-based survival analysis tool tailored for medical research (kmplot): development and implementation
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367126/
https://www.ncbi.nlm.nih.gov/pubmed/34309564
http://dx.doi.org/10.2196/27633
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