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Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
BACKGROUND: Survival analysis is a cornerstone of medical research, enabling the assessment of clinical outcomes for disease progression and treatment efficiency. Despite its central importance, no commonly used spreadsheet software can handle survival analysis and there is no web server available f...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
JMIR Publications
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367126/ https://www.ncbi.nlm.nih.gov/pubmed/34309564 http://dx.doi.org/10.2196/27633 |
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author | Lánczky, András Győrffy, Balázs |
author_facet | Lánczky, András Győrffy, Balázs |
author_sort | Lánczky, András |
collection | PubMed |
description | BACKGROUND: Survival analysis is a cornerstone of medical research, enabling the assessment of clinical outcomes for disease progression and treatment efficiency. Despite its central importance, no commonly used spreadsheet software can handle survival analysis and there is no web server available for its computation. OBJECTIVE: Here, we introduce a web-based tool capable of performing univariate and multivariate Cox proportional hazards survival analysis using data generated by genomic, transcriptomic, proteomic, or metabolomic studies. METHODS: We implemented different methods to establish cut-off values for the trichotomization or dichotomization of continuous data. The false discovery rate is computed to correct for multiple hypothesis testing. A multivariate analysis option enables comparing omics data with clinical variables. RESULTS: We established a registration-free web-based survival analysis tool capable of performing univariate and multivariate survival analysis using any custom-generated data. CONCLUSIONS: This tool fills a gap and will be an invaluable contribution to basic medical and clinical research. |
format | Online Article Text |
id | pubmed-8367126 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | JMIR Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-83671262021-08-24 Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation Lánczky, András Győrffy, Balázs J Med Internet Res Original Paper BACKGROUND: Survival analysis is a cornerstone of medical research, enabling the assessment of clinical outcomes for disease progression and treatment efficiency. Despite its central importance, no commonly used spreadsheet software can handle survival analysis and there is no web server available for its computation. OBJECTIVE: Here, we introduce a web-based tool capable of performing univariate and multivariate Cox proportional hazards survival analysis using data generated by genomic, transcriptomic, proteomic, or metabolomic studies. METHODS: We implemented different methods to establish cut-off values for the trichotomization or dichotomization of continuous data. The false discovery rate is computed to correct for multiple hypothesis testing. A multivariate analysis option enables comparing omics data with clinical variables. RESULTS: We established a registration-free web-based survival analysis tool capable of performing univariate and multivariate survival analysis using any custom-generated data. CONCLUSIONS: This tool fills a gap and will be an invaluable contribution to basic medical and clinical research. JMIR Publications 2021-07-26 /pmc/articles/PMC8367126/ /pubmed/34309564 http://dx.doi.org/10.2196/27633 Text en ©András Lánczky, Balázs Győrffy. Originally published in the Journal of Medical Internet Research (https://www.jmir.org), 26.07.2021. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on https://www.jmir.org/, as well as this copyright and license information must be included. |
spellingShingle | Original Paper Lánczky, András Győrffy, Balázs Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation |
title | Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation |
title_full | Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation |
title_fullStr | Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation |
title_full_unstemmed | Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation |
title_short | Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation |
title_sort | web-based survival analysis tool tailored for medical research (kmplot): development and implementation |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367126/ https://www.ncbi.nlm.nih.gov/pubmed/34309564 http://dx.doi.org/10.2196/27633 |
work_keys_str_mv | AT lanczkyandras webbasedsurvivalanalysistooltailoredformedicalresearchkmplotdevelopmentandimplementation AT gyorffybalazs webbasedsurvivalanalysistooltailoredformedicalresearchkmplotdevelopmentandimplementation |