Cargando…

Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T)

Paenibacillus sonchi LMG 24727(T) was acquired from the Belgian Coordinated Collections of Microorganisms (BCCM) isolated from Sonchus oleraceus rhizosphere soil. This strain is a gram-positive, aerobic, rod-shaped bacterium. The strain's genomic DNA was extracted using a Wizard® Genomic DNA Pu...

Descripción completa

Detalles Bibliográficos
Autores principales: Lee, GyuDae, Kim, Min-Ji, Shin, Jae-Ho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367780/
https://www.ncbi.nlm.nih.gov/pubmed/34430681
http://dx.doi.org/10.1016/j.dib.2021.107271
_version_ 1783739085343424512
author Lee, GyuDae
Kim, Min-Ji
Shin, Jae-Ho
author_facet Lee, GyuDae
Kim, Min-Ji
Shin, Jae-Ho
author_sort Lee, GyuDae
collection PubMed
description Paenibacillus sonchi LMG 24727(T) was acquired from the Belgian Coordinated Collections of Microorganisms (BCCM) isolated from Sonchus oleraceus rhizosphere soil. This strain is a gram-positive, aerobic, rod-shaped bacterium. The strain's genomic DNA was extracted using a Wizard® Genomic DNA Purification Kit, and whole-genome sequencing was performed using the Nanopore MinION platform. Whole-genome assembly was performed using Flye assembler, and a total 7,782,254 bp length of circular chromosome and two plasmids was assembled by using a 1,558,445,868 bp length of raw reads. Genome annotation by the Prokaryotic Genome Annotation Pipeline (PGAP) showed the complete genome to contain 50.6% G+C content; 6264 protein-coding genes; 27 rRNA genes; 89 tRNA genes; and 4 ncRNA genes. Additionally, multiple genes related to nitrogen metabolism were annotated from the Rapid Annotation using Subsystem Technology (RAST) server. The complete genome sequence data have been submitted to the National Center for Biotechnology Information (NCBI) and have been deposited at DDBJ/ENA/GenBank under the accession number CP068595.1, CP068596.1, and CP068597.1.
format Online
Article
Text
id pubmed-8367780
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-83677802021-08-23 Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T) Lee, GyuDae Kim, Min-Ji Shin, Jae-Ho Data Brief Data Article Paenibacillus sonchi LMG 24727(T) was acquired from the Belgian Coordinated Collections of Microorganisms (BCCM) isolated from Sonchus oleraceus rhizosphere soil. This strain is a gram-positive, aerobic, rod-shaped bacterium. The strain's genomic DNA was extracted using a Wizard® Genomic DNA Purification Kit, and whole-genome sequencing was performed using the Nanopore MinION platform. Whole-genome assembly was performed using Flye assembler, and a total 7,782,254 bp length of circular chromosome and two plasmids was assembled by using a 1,558,445,868 bp length of raw reads. Genome annotation by the Prokaryotic Genome Annotation Pipeline (PGAP) showed the complete genome to contain 50.6% G+C content; 6264 protein-coding genes; 27 rRNA genes; 89 tRNA genes; and 4 ncRNA genes. Additionally, multiple genes related to nitrogen metabolism were annotated from the Rapid Annotation using Subsystem Technology (RAST) server. The complete genome sequence data have been submitted to the National Center for Biotechnology Information (NCBI) and have been deposited at DDBJ/ENA/GenBank under the accession number CP068595.1, CP068596.1, and CP068597.1. Elsevier 2021-08-08 /pmc/articles/PMC8367780/ /pubmed/34430681 http://dx.doi.org/10.1016/j.dib.2021.107271 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Lee, GyuDae
Kim, Min-Ji
Shin, Jae-Ho
Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T)
title Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T)
title_full Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T)
title_fullStr Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T)
title_full_unstemmed Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T)
title_short Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T)
title_sort data on complete genome sequence and annotation of paenibacillus sonchi lmg 24727(t)
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367780/
https://www.ncbi.nlm.nih.gov/pubmed/34430681
http://dx.doi.org/10.1016/j.dib.2021.107271
work_keys_str_mv AT leegyudae dataoncompletegenomesequenceandannotationofpaenibacillussonchilmg24727t
AT kimminji dataoncompletegenomesequenceandannotationofpaenibacillussonchilmg24727t
AT shinjaeho dataoncompletegenomesequenceandannotationofpaenibacillussonchilmg24727t