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Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T)
Paenibacillus sonchi LMG 24727(T) was acquired from the Belgian Coordinated Collections of Microorganisms (BCCM) isolated from Sonchus oleraceus rhizosphere soil. This strain is a gram-positive, aerobic, rod-shaped bacterium. The strain's genomic DNA was extracted using a Wizard® Genomic DNA Pu...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367780/ https://www.ncbi.nlm.nih.gov/pubmed/34430681 http://dx.doi.org/10.1016/j.dib.2021.107271 |
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author | Lee, GyuDae Kim, Min-Ji Shin, Jae-Ho |
author_facet | Lee, GyuDae Kim, Min-Ji Shin, Jae-Ho |
author_sort | Lee, GyuDae |
collection | PubMed |
description | Paenibacillus sonchi LMG 24727(T) was acquired from the Belgian Coordinated Collections of Microorganisms (BCCM) isolated from Sonchus oleraceus rhizosphere soil. This strain is a gram-positive, aerobic, rod-shaped bacterium. The strain's genomic DNA was extracted using a Wizard® Genomic DNA Purification Kit, and whole-genome sequencing was performed using the Nanopore MinION platform. Whole-genome assembly was performed using Flye assembler, and a total 7,782,254 bp length of circular chromosome and two plasmids was assembled by using a 1,558,445,868 bp length of raw reads. Genome annotation by the Prokaryotic Genome Annotation Pipeline (PGAP) showed the complete genome to contain 50.6% G+C content; 6264 protein-coding genes; 27 rRNA genes; 89 tRNA genes; and 4 ncRNA genes. Additionally, multiple genes related to nitrogen metabolism were annotated from the Rapid Annotation using Subsystem Technology (RAST) server. The complete genome sequence data have been submitted to the National Center for Biotechnology Information (NCBI) and have been deposited at DDBJ/ENA/GenBank under the accession number CP068595.1, CP068596.1, and CP068597.1. |
format | Online Article Text |
id | pubmed-8367780 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-83677802021-08-23 Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T) Lee, GyuDae Kim, Min-Ji Shin, Jae-Ho Data Brief Data Article Paenibacillus sonchi LMG 24727(T) was acquired from the Belgian Coordinated Collections of Microorganisms (BCCM) isolated from Sonchus oleraceus rhizosphere soil. This strain is a gram-positive, aerobic, rod-shaped bacterium. The strain's genomic DNA was extracted using a Wizard® Genomic DNA Purification Kit, and whole-genome sequencing was performed using the Nanopore MinION platform. Whole-genome assembly was performed using Flye assembler, and a total 7,782,254 bp length of circular chromosome and two plasmids was assembled by using a 1,558,445,868 bp length of raw reads. Genome annotation by the Prokaryotic Genome Annotation Pipeline (PGAP) showed the complete genome to contain 50.6% G+C content; 6264 protein-coding genes; 27 rRNA genes; 89 tRNA genes; and 4 ncRNA genes. Additionally, multiple genes related to nitrogen metabolism were annotated from the Rapid Annotation using Subsystem Technology (RAST) server. The complete genome sequence data have been submitted to the National Center for Biotechnology Information (NCBI) and have been deposited at DDBJ/ENA/GenBank under the accession number CP068595.1, CP068596.1, and CP068597.1. Elsevier 2021-08-08 /pmc/articles/PMC8367780/ /pubmed/34430681 http://dx.doi.org/10.1016/j.dib.2021.107271 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data Article Lee, GyuDae Kim, Min-Ji Shin, Jae-Ho Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T) |
title | Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T) |
title_full | Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T) |
title_fullStr | Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T) |
title_full_unstemmed | Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T) |
title_short | Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727(T) |
title_sort | data on complete genome sequence and annotation of paenibacillus sonchi lmg 24727(t) |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367780/ https://www.ncbi.nlm.nih.gov/pubmed/34430681 http://dx.doi.org/10.1016/j.dib.2021.107271 |
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