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iCOVID: interpretable deep learning framework for early recovery-time prediction of COVID-19 patients

Most prior studies focused on developing models for the severity or mortality prediction of COVID-19 patients. However, effective models for recovery-time prediction are still lacking. Here, we present a deep learning solution named iCOVID that can successfully predict the recovery-time of COVID-19...

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Autores principales: Wang, Jun, Liu, Chen, Li, Jingwen, Yuan, Cheng, Zhang, Lichi, Jin, Cheng, Xu, Jianwei, Wang, Yaqi, Wen, Yaofeng, Lu, Hongbing, Li, Biao, Chen, Chang, Li, Xiangdong, Shen, Dinggang, Qian, Dahong, Wang, Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367981/
https://www.ncbi.nlm.nih.gov/pubmed/34400751
http://dx.doi.org/10.1038/s41746-021-00496-3
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author Wang, Jun
Liu, Chen
Li, Jingwen
Yuan, Cheng
Zhang, Lichi
Jin, Cheng
Xu, Jianwei
Wang, Yaqi
Wen, Yaofeng
Lu, Hongbing
Li, Biao
Chen, Chang
Li, Xiangdong
Shen, Dinggang
Qian, Dahong
Wang, Jian
author_facet Wang, Jun
Liu, Chen
Li, Jingwen
Yuan, Cheng
Zhang, Lichi
Jin, Cheng
Xu, Jianwei
Wang, Yaqi
Wen, Yaofeng
Lu, Hongbing
Li, Biao
Chen, Chang
Li, Xiangdong
Shen, Dinggang
Qian, Dahong
Wang, Jian
author_sort Wang, Jun
collection PubMed
description Most prior studies focused on developing models for the severity or mortality prediction of COVID-19 patients. However, effective models for recovery-time prediction are still lacking. Here, we present a deep learning solution named iCOVID that can successfully predict the recovery-time of COVID-19 patients based on predefined treatment schemes and heterogeneous multimodal patient information collected within 48 hours after admission. Meanwhile, an interpretable mechanism termed FSR is integrated into iCOVID to reveal the features greatly affecting the prediction of each patient. Data from a total of 3008 patients were collected from three hospitals in Wuhan, China, for large-scale verification. The experiments demonstrate that iCOVID can achieve a time-dependent concordance index of 74.9% (95% CI: 73.6-76.3%) and an average day error of 4.4 days (95% CI: 4.2-4.6 days). Our study reveals that treatment schemes, age, symptoms, comorbidities, and biomarkers are highly related to recovery-time predictions.
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spelling pubmed-83679812021-08-31 iCOVID: interpretable deep learning framework for early recovery-time prediction of COVID-19 patients Wang, Jun Liu, Chen Li, Jingwen Yuan, Cheng Zhang, Lichi Jin, Cheng Xu, Jianwei Wang, Yaqi Wen, Yaofeng Lu, Hongbing Li, Biao Chen, Chang Li, Xiangdong Shen, Dinggang Qian, Dahong Wang, Jian NPJ Digit Med Article Most prior studies focused on developing models for the severity or mortality prediction of COVID-19 patients. However, effective models for recovery-time prediction are still lacking. Here, we present a deep learning solution named iCOVID that can successfully predict the recovery-time of COVID-19 patients based on predefined treatment schemes and heterogeneous multimodal patient information collected within 48 hours after admission. Meanwhile, an interpretable mechanism termed FSR is integrated into iCOVID to reveal the features greatly affecting the prediction of each patient. Data from a total of 3008 patients were collected from three hospitals in Wuhan, China, for large-scale verification. The experiments demonstrate that iCOVID can achieve a time-dependent concordance index of 74.9% (95% CI: 73.6-76.3%) and an average day error of 4.4 days (95% CI: 4.2-4.6 days). Our study reveals that treatment schemes, age, symptoms, comorbidities, and biomarkers are highly related to recovery-time predictions. Nature Publishing Group UK 2021-08-16 /pmc/articles/PMC8367981/ /pubmed/34400751 http://dx.doi.org/10.1038/s41746-021-00496-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wang, Jun
Liu, Chen
Li, Jingwen
Yuan, Cheng
Zhang, Lichi
Jin, Cheng
Xu, Jianwei
Wang, Yaqi
Wen, Yaofeng
Lu, Hongbing
Li, Biao
Chen, Chang
Li, Xiangdong
Shen, Dinggang
Qian, Dahong
Wang, Jian
iCOVID: interpretable deep learning framework for early recovery-time prediction of COVID-19 patients
title iCOVID: interpretable deep learning framework for early recovery-time prediction of COVID-19 patients
title_full iCOVID: interpretable deep learning framework for early recovery-time prediction of COVID-19 patients
title_fullStr iCOVID: interpretable deep learning framework for early recovery-time prediction of COVID-19 patients
title_full_unstemmed iCOVID: interpretable deep learning framework for early recovery-time prediction of COVID-19 patients
title_short iCOVID: interpretable deep learning framework for early recovery-time prediction of COVID-19 patients
title_sort icovid: interpretable deep learning framework for early recovery-time prediction of covid-19 patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8367981/
https://www.ncbi.nlm.nih.gov/pubmed/34400751
http://dx.doi.org/10.1038/s41746-021-00496-3
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