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Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death

RNA analysis of post-mortem tissues, or thanatotranscriptomics, has become a topic of interest in forensic science due to the essential information it can provide in forensic investigations. Several studies have previously investigated the effect of death on gene transcription, but it has never been...

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Autores principales: Antiga, Laura G., Sibbens, Lode, Abakkouy, Yasmina, Decorte, Ronny, Van Den Bogaert, Wouter, Van de Voorde, Wim, Bekaert, Bram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8368024/
https://www.ncbi.nlm.nih.gov/pubmed/34400689
http://dx.doi.org/10.1038/s41598-021-96095-z
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author Antiga, Laura G.
Sibbens, Lode
Abakkouy, Yasmina
Decorte, Ronny
Van Den Bogaert, Wouter
Van de Voorde, Wim
Bekaert, Bram
author_facet Antiga, Laura G.
Sibbens, Lode
Abakkouy, Yasmina
Decorte, Ronny
Van Den Bogaert, Wouter
Van de Voorde, Wim
Bekaert, Bram
author_sort Antiga, Laura G.
collection PubMed
description RNA analysis of post-mortem tissues, or thanatotranscriptomics, has become a topic of interest in forensic science due to the essential information it can provide in forensic investigations. Several studies have previously investigated the effect of death on gene transcription, but it has never been conducted with samples of the same individual. For the first time, a longitudinal mRNA expression analysis study was performed with post-mortem human blood samples from individuals with a known time of death. The results reveal that, after death, two clearly differentiated groups of up- and down-regulated genes can be detected. Pathway analysis suggests active processes that promote cell survival and DNA damage repair, rather than passive degradation, are the source of early post-mortem changes of gene expression in blood. In addition, a generalized linear model with an elastic net restriction predicted post-mortem interval with a root mean square error of 4.75 h. In conclusion, we demonstrate that post-mortem gene expression data can be used as biomarkers to estimate the post-mortem interval though further validation using independent sample sets is required before use in forensic casework.
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spelling pubmed-83680242021-08-17 Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death Antiga, Laura G. Sibbens, Lode Abakkouy, Yasmina Decorte, Ronny Van Den Bogaert, Wouter Van de Voorde, Wim Bekaert, Bram Sci Rep Article RNA analysis of post-mortem tissues, or thanatotranscriptomics, has become a topic of interest in forensic science due to the essential information it can provide in forensic investigations. Several studies have previously investigated the effect of death on gene transcription, but it has never been conducted with samples of the same individual. For the first time, a longitudinal mRNA expression analysis study was performed with post-mortem human blood samples from individuals with a known time of death. The results reveal that, after death, two clearly differentiated groups of up- and down-regulated genes can be detected. Pathway analysis suggests active processes that promote cell survival and DNA damage repair, rather than passive degradation, are the source of early post-mortem changes of gene expression in blood. In addition, a generalized linear model with an elastic net restriction predicted post-mortem interval with a root mean square error of 4.75 h. In conclusion, we demonstrate that post-mortem gene expression data can be used as biomarkers to estimate the post-mortem interval though further validation using independent sample sets is required before use in forensic casework. Nature Publishing Group UK 2021-08-16 /pmc/articles/PMC8368024/ /pubmed/34400689 http://dx.doi.org/10.1038/s41598-021-96095-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Antiga, Laura G.
Sibbens, Lode
Abakkouy, Yasmina
Decorte, Ronny
Van Den Bogaert, Wouter
Van de Voorde, Wim
Bekaert, Bram
Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death
title Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death
title_full Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death
title_fullStr Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death
title_full_unstemmed Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death
title_short Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death
title_sort cell survival and dna damage repair are promoted in the human blood thanatotranscriptome shortly after death
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8368024/
https://www.ncbi.nlm.nih.gov/pubmed/34400689
http://dx.doi.org/10.1038/s41598-021-96095-z
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