Cargando…
Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death
RNA analysis of post-mortem tissues, or thanatotranscriptomics, has become a topic of interest in forensic science due to the essential information it can provide in forensic investigations. Several studies have previously investigated the effect of death on gene transcription, but it has never been...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8368024/ https://www.ncbi.nlm.nih.gov/pubmed/34400689 http://dx.doi.org/10.1038/s41598-021-96095-z |
_version_ | 1783739137410465792 |
---|---|
author | Antiga, Laura G. Sibbens, Lode Abakkouy, Yasmina Decorte, Ronny Van Den Bogaert, Wouter Van de Voorde, Wim Bekaert, Bram |
author_facet | Antiga, Laura G. Sibbens, Lode Abakkouy, Yasmina Decorte, Ronny Van Den Bogaert, Wouter Van de Voorde, Wim Bekaert, Bram |
author_sort | Antiga, Laura G. |
collection | PubMed |
description | RNA analysis of post-mortem tissues, or thanatotranscriptomics, has become a topic of interest in forensic science due to the essential information it can provide in forensic investigations. Several studies have previously investigated the effect of death on gene transcription, but it has never been conducted with samples of the same individual. For the first time, a longitudinal mRNA expression analysis study was performed with post-mortem human blood samples from individuals with a known time of death. The results reveal that, after death, two clearly differentiated groups of up- and down-regulated genes can be detected. Pathway analysis suggests active processes that promote cell survival and DNA damage repair, rather than passive degradation, are the source of early post-mortem changes of gene expression in blood. In addition, a generalized linear model with an elastic net restriction predicted post-mortem interval with a root mean square error of 4.75 h. In conclusion, we demonstrate that post-mortem gene expression data can be used as biomarkers to estimate the post-mortem interval though further validation using independent sample sets is required before use in forensic casework. |
format | Online Article Text |
id | pubmed-8368024 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-83680242021-08-17 Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death Antiga, Laura G. Sibbens, Lode Abakkouy, Yasmina Decorte, Ronny Van Den Bogaert, Wouter Van de Voorde, Wim Bekaert, Bram Sci Rep Article RNA analysis of post-mortem tissues, or thanatotranscriptomics, has become a topic of interest in forensic science due to the essential information it can provide in forensic investigations. Several studies have previously investigated the effect of death on gene transcription, but it has never been conducted with samples of the same individual. For the first time, a longitudinal mRNA expression analysis study was performed with post-mortem human blood samples from individuals with a known time of death. The results reveal that, after death, two clearly differentiated groups of up- and down-regulated genes can be detected. Pathway analysis suggests active processes that promote cell survival and DNA damage repair, rather than passive degradation, are the source of early post-mortem changes of gene expression in blood. In addition, a generalized linear model with an elastic net restriction predicted post-mortem interval with a root mean square error of 4.75 h. In conclusion, we demonstrate that post-mortem gene expression data can be used as biomarkers to estimate the post-mortem interval though further validation using independent sample sets is required before use in forensic casework. Nature Publishing Group UK 2021-08-16 /pmc/articles/PMC8368024/ /pubmed/34400689 http://dx.doi.org/10.1038/s41598-021-96095-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Antiga, Laura G. Sibbens, Lode Abakkouy, Yasmina Decorte, Ronny Van Den Bogaert, Wouter Van de Voorde, Wim Bekaert, Bram Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death |
title | Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death |
title_full | Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death |
title_fullStr | Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death |
title_full_unstemmed | Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death |
title_short | Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death |
title_sort | cell survival and dna damage repair are promoted in the human blood thanatotranscriptome shortly after death |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8368024/ https://www.ncbi.nlm.nih.gov/pubmed/34400689 http://dx.doi.org/10.1038/s41598-021-96095-z |
work_keys_str_mv | AT antigalaurag cellsurvivalanddnadamagerepairarepromotedinthehumanbloodthanatotranscriptomeshortlyafterdeath AT sibbenslode cellsurvivalanddnadamagerepairarepromotedinthehumanbloodthanatotranscriptomeshortlyafterdeath AT abakkouyyasmina cellsurvivalanddnadamagerepairarepromotedinthehumanbloodthanatotranscriptomeshortlyafterdeath AT decorteronny cellsurvivalanddnadamagerepairarepromotedinthehumanbloodthanatotranscriptomeshortlyafterdeath AT vandenbogaertwouter cellsurvivalanddnadamagerepairarepromotedinthehumanbloodthanatotranscriptomeshortlyafterdeath AT vandevoordewim cellsurvivalanddnadamagerepairarepromotedinthehumanbloodthanatotranscriptomeshortlyafterdeath AT bekaertbram cellsurvivalanddnadamagerepairarepromotedinthehumanbloodthanatotranscriptomeshortlyafterdeath |