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Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers

In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject...

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Autores principales: Cohen-Adad, Julien, Alonso-Ortiz, Eva, Abramovic, Mihael, Arneitz, Carina, Atcheson, Nicole, Barlow, Laura, Barry, Robert L., Barth, Markus, Battiston, Marco, Büchel, Christian, Budde, Matthew, Callot, Virginie, Combes, Anna J. E., De Leener, Benjamin, Descoteaux, Maxime, de Sousa, Paulo Loureiro, Dostál, Marek, Doyon, Julien, Dvorak, Adam, Eippert, Falk, Epperson, Karla R., Epperson, Kevin S., Freund, Patrick, Finsterbusch, Jürgen, Foias, Alexandru, Fratini, Michela, Fukunaga, Issei, Gandini Wheeler-Kingshott, Claudia A. M., Germani, Giancarlo, Gilbert, Guillaume, Giove, Federico, Gros, Charley, Grussu, Francesco, Hagiwara, Akifumi, Henry, Pierre-Gilles, Horák, Tomáš, Hori, Masaaki, Joers, James, Kamiya, Kouhei, Karbasforoushan, Haleh, Keřkovský, Miloš, Khatibi, Ali, Kim, Joo-Won, Kinany, Nawal, Kitzler, Hagen H., Kolind, Shannon, Kong, Yazhuo, Kudlička, Petr, Kuntke, Paul, Kurniawan, Nyoman D., Kusmia, Slawomir, Labounek, René, Laganà, Maria Marcella, Laule, Cornelia, Law, Christine S., Lenglet, Christophe, Leutritz, Tobias, Liu, Yaou, Llufriu, Sara, Mackey, Sean, Martinez-Heras, Eloy, Mattera, Loan, Nestrasil, Igor, O’Grady, Kristin P., Papinutto, Nico, Papp, Daniel, Pareto, Deborah, Parrish, Todd B., Pichiecchio, Anna, Prados, Ferran, Rovira, Àlex, Ruitenberg, Marc J., Samson, Rebecca S., Savini, Giovanni, Seif, Maryam, Seifert, Alan C., Smith, Alex K., Smith, Seth A., Smith, Zachary A., Solana, Elisabeth, Suzuki, Y., Tackley, George, Tinnermann, Alexandra, Valošek, Jan, Van De Ville, Dimitri, Yiannakas, Marios C., Weber II, Kenneth A., Weiskopf, Nikolaus, Wise, Richard G., Wyss, Patrik O., Xu, Junqian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8368310/
https://www.ncbi.nlm.nih.gov/pubmed/34400655
http://dx.doi.org/10.1038/s41597-021-00941-8
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author Cohen-Adad, Julien
Alonso-Ortiz, Eva
Abramovic, Mihael
Arneitz, Carina
Atcheson, Nicole
Barlow, Laura
Barry, Robert L.
Barth, Markus
Battiston, Marco
Büchel, Christian
Budde, Matthew
Callot, Virginie
Combes, Anna J. E.
De Leener, Benjamin
Descoteaux, Maxime
de Sousa, Paulo Loureiro
Dostál, Marek
Doyon, Julien
Dvorak, Adam
Eippert, Falk
Epperson, Karla R.
Epperson, Kevin S.
Freund, Patrick
Finsterbusch, Jürgen
Foias, Alexandru
Fratini, Michela
Fukunaga, Issei
Gandini Wheeler-Kingshott, Claudia A. M.
Germani, Giancarlo
Gilbert, Guillaume
Giove, Federico
Gros, Charley
Grussu, Francesco
Hagiwara, Akifumi
Henry, Pierre-Gilles
Horák, Tomáš
Hori, Masaaki
Joers, James
Kamiya, Kouhei
Karbasforoushan, Haleh
Keřkovský, Miloš
Khatibi, Ali
Kim, Joo-Won
Kinany, Nawal
Kitzler, Hagen H.
Kolind, Shannon
Kong, Yazhuo
Kudlička, Petr
Kuntke, Paul
Kurniawan, Nyoman D.
Kusmia, Slawomir
Labounek, René
Laganà, Maria Marcella
Laule, Cornelia
Law, Christine S.
Lenglet, Christophe
Leutritz, Tobias
Liu, Yaou
Llufriu, Sara
Mackey, Sean
Martinez-Heras, Eloy
Mattera, Loan
Nestrasil, Igor
O’Grady, Kristin P.
Papinutto, Nico
Papp, Daniel
Pareto, Deborah
Parrish, Todd B.
Pichiecchio, Anna
Prados, Ferran
Rovira, Àlex
Ruitenberg, Marc J.
Samson, Rebecca S.
Savini, Giovanni
Seif, Maryam
Seifert, Alan C.
Smith, Alex K.
Smith, Seth A.
Smith, Zachary A.
Solana, Elisabeth
Suzuki, Y.
Tackley, George
Tinnermann, Alexandra
Valošek, Jan
Van De Ville, Dimitri
Yiannakas, Marios C.
Weber II, Kenneth A.
Weiskopf, Nikolaus
Wise, Richard G.
Wyss, Patrik O.
Xu, Junqian
author_facet Cohen-Adad, Julien
Alonso-Ortiz, Eva
Abramovic, Mihael
Arneitz, Carina
Atcheson, Nicole
Barlow, Laura
Barry, Robert L.
Barth, Markus
Battiston, Marco
Büchel, Christian
Budde, Matthew
Callot, Virginie
Combes, Anna J. E.
De Leener, Benjamin
Descoteaux, Maxime
de Sousa, Paulo Loureiro
Dostál, Marek
Doyon, Julien
Dvorak, Adam
Eippert, Falk
Epperson, Karla R.
Epperson, Kevin S.
Freund, Patrick
Finsterbusch, Jürgen
Foias, Alexandru
Fratini, Michela
Fukunaga, Issei
Gandini Wheeler-Kingshott, Claudia A. M.
Germani, Giancarlo
Gilbert, Guillaume
Giove, Federico
Gros, Charley
Grussu, Francesco
Hagiwara, Akifumi
Henry, Pierre-Gilles
Horák, Tomáš
Hori, Masaaki
Joers, James
Kamiya, Kouhei
Karbasforoushan, Haleh
Keřkovský, Miloš
Khatibi, Ali
Kim, Joo-Won
Kinany, Nawal
Kitzler, Hagen H.
Kolind, Shannon
Kong, Yazhuo
Kudlička, Petr
Kuntke, Paul
Kurniawan, Nyoman D.
Kusmia, Slawomir
Labounek, René
Laganà, Maria Marcella
Laule, Cornelia
Law, Christine S.
Lenglet, Christophe
Leutritz, Tobias
Liu, Yaou
Llufriu, Sara
Mackey, Sean
Martinez-Heras, Eloy
Mattera, Loan
Nestrasil, Igor
O’Grady, Kristin P.
Papinutto, Nico
Papp, Daniel
Pareto, Deborah
Parrish, Todd B.
Pichiecchio, Anna
Prados, Ferran
Rovira, Àlex
Ruitenberg, Marc J.
Samson, Rebecca S.
Savini, Giovanni
Seif, Maryam
Seifert, Alan C.
Smith, Alex K.
Smith, Seth A.
Smith, Zachary A.
Solana, Elisabeth
Suzuki, Y.
Tackley, George
Tinnermann, Alexandra
Valošek, Jan
Van De Ville, Dimitri
Yiannakas, Marios C.
Weber II, Kenneth A.
Weiskopf, Nikolaus
Wise, Richard G.
Wyss, Patrik O.
Xu, Junqian
author_sort Cohen-Adad, Julien
collection PubMed
description In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject dataset across 42 centers (for a total of 260 participants), spanning the three main MRI manufacturers: GE, Philips and Siemens. Both datasets are publicly available via git-annex. Data were analysed using the Spinal Cord Toolbox to produce normative values as well as inter/intra-site and inter/intra-manufacturer statistics. Reproducibility for the spine generic protocol was high across sites and manufacturers, with an average inter-site coefficient of variation of less than 5% for all the metrics. Full documentation and results can be found at https://spine-generic.rtfd.io/. The datasets and analysis pipeline will help pave the way towards accessible and reproducible quantitative MRI in the spinal cord.
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spelling pubmed-83683102021-08-31 Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers Cohen-Adad, Julien Alonso-Ortiz, Eva Abramovic, Mihael Arneitz, Carina Atcheson, Nicole Barlow, Laura Barry, Robert L. Barth, Markus Battiston, Marco Büchel, Christian Budde, Matthew Callot, Virginie Combes, Anna J. E. De Leener, Benjamin Descoteaux, Maxime de Sousa, Paulo Loureiro Dostál, Marek Doyon, Julien Dvorak, Adam Eippert, Falk Epperson, Karla R. Epperson, Kevin S. Freund, Patrick Finsterbusch, Jürgen Foias, Alexandru Fratini, Michela Fukunaga, Issei Gandini Wheeler-Kingshott, Claudia A. M. Germani, Giancarlo Gilbert, Guillaume Giove, Federico Gros, Charley Grussu, Francesco Hagiwara, Akifumi Henry, Pierre-Gilles Horák, Tomáš Hori, Masaaki Joers, James Kamiya, Kouhei Karbasforoushan, Haleh Keřkovský, Miloš Khatibi, Ali Kim, Joo-Won Kinany, Nawal Kitzler, Hagen H. Kolind, Shannon Kong, Yazhuo Kudlička, Petr Kuntke, Paul Kurniawan, Nyoman D. Kusmia, Slawomir Labounek, René Laganà, Maria Marcella Laule, Cornelia Law, Christine S. Lenglet, Christophe Leutritz, Tobias Liu, Yaou Llufriu, Sara Mackey, Sean Martinez-Heras, Eloy Mattera, Loan Nestrasil, Igor O’Grady, Kristin P. Papinutto, Nico Papp, Daniel Pareto, Deborah Parrish, Todd B. Pichiecchio, Anna Prados, Ferran Rovira, Àlex Ruitenberg, Marc J. Samson, Rebecca S. Savini, Giovanni Seif, Maryam Seifert, Alan C. Smith, Alex K. Smith, Seth A. Smith, Zachary A. Solana, Elisabeth Suzuki, Y. Tackley, George Tinnermann, Alexandra Valošek, Jan Van De Ville, Dimitri Yiannakas, Marios C. Weber II, Kenneth A. Weiskopf, Nikolaus Wise, Richard G. Wyss, Patrik O. Xu, Junqian Sci Data Data Descriptor In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject dataset across 42 centers (for a total of 260 participants), spanning the three main MRI manufacturers: GE, Philips and Siemens. Both datasets are publicly available via git-annex. Data were analysed using the Spinal Cord Toolbox to produce normative values as well as inter/intra-site and inter/intra-manufacturer statistics. Reproducibility for the spine generic protocol was high across sites and manufacturers, with an average inter-site coefficient of variation of less than 5% for all the metrics. Full documentation and results can be found at https://spine-generic.rtfd.io/. The datasets and analysis pipeline will help pave the way towards accessible and reproducible quantitative MRI in the spinal cord. Nature Publishing Group UK 2021-08-16 /pmc/articles/PMC8368310/ /pubmed/34400655 http://dx.doi.org/10.1038/s41597-021-00941-8 Text en © The Author(s) 2021, corrected publication 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Cohen-Adad, Julien
Alonso-Ortiz, Eva
Abramovic, Mihael
Arneitz, Carina
Atcheson, Nicole
Barlow, Laura
Barry, Robert L.
Barth, Markus
Battiston, Marco
Büchel, Christian
Budde, Matthew
Callot, Virginie
Combes, Anna J. E.
De Leener, Benjamin
Descoteaux, Maxime
de Sousa, Paulo Loureiro
Dostál, Marek
Doyon, Julien
Dvorak, Adam
Eippert, Falk
Epperson, Karla R.
Epperson, Kevin S.
Freund, Patrick
Finsterbusch, Jürgen
Foias, Alexandru
Fratini, Michela
Fukunaga, Issei
Gandini Wheeler-Kingshott, Claudia A. M.
Germani, Giancarlo
Gilbert, Guillaume
Giove, Federico
Gros, Charley
Grussu, Francesco
Hagiwara, Akifumi
Henry, Pierre-Gilles
Horák, Tomáš
Hori, Masaaki
Joers, James
Kamiya, Kouhei
Karbasforoushan, Haleh
Keřkovský, Miloš
Khatibi, Ali
Kim, Joo-Won
Kinany, Nawal
Kitzler, Hagen H.
Kolind, Shannon
Kong, Yazhuo
Kudlička, Petr
Kuntke, Paul
Kurniawan, Nyoman D.
Kusmia, Slawomir
Labounek, René
Laganà, Maria Marcella
Laule, Cornelia
Law, Christine S.
Lenglet, Christophe
Leutritz, Tobias
Liu, Yaou
Llufriu, Sara
Mackey, Sean
Martinez-Heras, Eloy
Mattera, Loan
Nestrasil, Igor
O’Grady, Kristin P.
Papinutto, Nico
Papp, Daniel
Pareto, Deborah
Parrish, Todd B.
Pichiecchio, Anna
Prados, Ferran
Rovira, Àlex
Ruitenberg, Marc J.
Samson, Rebecca S.
Savini, Giovanni
Seif, Maryam
Seifert, Alan C.
Smith, Alex K.
Smith, Seth A.
Smith, Zachary A.
Solana, Elisabeth
Suzuki, Y.
Tackley, George
Tinnermann, Alexandra
Valošek, Jan
Van De Ville, Dimitri
Yiannakas, Marios C.
Weber II, Kenneth A.
Weiskopf, Nikolaus
Wise, Richard G.
Wyss, Patrik O.
Xu, Junqian
Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
title Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
title_full Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
title_fullStr Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
title_full_unstemmed Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
title_short Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
title_sort open-access quantitative mri data of the spinal cord and reproducibility across participants, sites and manufacturers
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8368310/
https://www.ncbi.nlm.nih.gov/pubmed/34400655
http://dx.doi.org/10.1038/s41597-021-00941-8
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