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SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image

METHODS: A new SERR-U-Net framework for retinal vessel segmentation is proposed, which leverages technologies including Squeeze-and-Excitation (SE), residual module, and recurrent block. First, the convolution layers of encoder and decoder are modified on the basis of U-Net, and the recurrent block...

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Detalles Bibliográficos
Autores principales: Wang, Jinke, Li, Xiang, Lv, Peiqing, Shi, Changfa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8371614/
https://www.ncbi.nlm.nih.gov/pubmed/34422093
http://dx.doi.org/10.1155/2021/5976097
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author Wang, Jinke
Li, Xiang
Lv, Peiqing
Shi, Changfa
author_facet Wang, Jinke
Li, Xiang
Lv, Peiqing
Shi, Changfa
author_sort Wang, Jinke
collection PubMed
description METHODS: A new SERR-U-Net framework for retinal vessel segmentation is proposed, which leverages technologies including Squeeze-and-Excitation (SE), residual module, and recurrent block. First, the convolution layers of encoder and decoder are modified on the basis of U-Net, and the recurrent block is used to increase the network depth. Second, the residual module is utilized to alleviate the vanishing gradient problem. Finally, to derive more specific vascular features, we employed the SE structure to introduce attention mechanism into the U-shaped network. In addition, enhanced super-resolution generative adversarial networks (ESRGANs) are also deployed to remove the noise of retinal image. RESULTS: The effectiveness of this method was tested on two public datasets, DRIVE and STARE. In the experiment of DRIVE dataset, the accuracy and AUC (area under the curve) of our method were 0.9552 and 0.9784, respectively, and for SATRE dataset, 0.9796 and 0.9859 were achieved, respectively, which proved a high accuracy and promising prospect on clinical assistance. CONCLUSION: An improved U-Net network combining SE, ResNet, and recurrent technologies is developed for automatic vessel segmentation from retinal image. This new model enables an improvement on the accuracy compared to learning-based methods, and its robustness in circumvent challenging cases such as small blood vessels and intersection of vessels is also well demonstrated and validated.
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spelling pubmed-83716142021-08-19 SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image Wang, Jinke Li, Xiang Lv, Peiqing Shi, Changfa Comput Math Methods Med Research Article METHODS: A new SERR-U-Net framework for retinal vessel segmentation is proposed, which leverages technologies including Squeeze-and-Excitation (SE), residual module, and recurrent block. First, the convolution layers of encoder and decoder are modified on the basis of U-Net, and the recurrent block is used to increase the network depth. Second, the residual module is utilized to alleviate the vanishing gradient problem. Finally, to derive more specific vascular features, we employed the SE structure to introduce attention mechanism into the U-shaped network. In addition, enhanced super-resolution generative adversarial networks (ESRGANs) are also deployed to remove the noise of retinal image. RESULTS: The effectiveness of this method was tested on two public datasets, DRIVE and STARE. In the experiment of DRIVE dataset, the accuracy and AUC (area under the curve) of our method were 0.9552 and 0.9784, respectively, and for SATRE dataset, 0.9796 and 0.9859 were achieved, respectively, which proved a high accuracy and promising prospect on clinical assistance. CONCLUSION: An improved U-Net network combining SE, ResNet, and recurrent technologies is developed for automatic vessel segmentation from retinal image. This new model enables an improvement on the accuracy compared to learning-based methods, and its robustness in circumvent challenging cases such as small blood vessels and intersection of vessels is also well demonstrated and validated. Hindawi 2021-08-09 /pmc/articles/PMC8371614/ /pubmed/34422093 http://dx.doi.org/10.1155/2021/5976097 Text en Copyright © 2021 Jinke Wang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wang, Jinke
Li, Xiang
Lv, Peiqing
Shi, Changfa
SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image
title SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image
title_full SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image
title_fullStr SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image
title_full_unstemmed SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image
title_short SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image
title_sort serr-u-net: squeeze-and-excitation residual and recurrent block-based u-net for automatic vessel segmentation in retinal image
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8371614/
https://www.ncbi.nlm.nih.gov/pubmed/34422093
http://dx.doi.org/10.1155/2021/5976097
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