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SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image
METHODS: A new SERR-U-Net framework for retinal vessel segmentation is proposed, which leverages technologies including Squeeze-and-Excitation (SE), residual module, and recurrent block. First, the convolution layers of encoder and decoder are modified on the basis of U-Net, and the recurrent block...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8371614/ https://www.ncbi.nlm.nih.gov/pubmed/34422093 http://dx.doi.org/10.1155/2021/5976097 |
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author | Wang, Jinke Li, Xiang Lv, Peiqing Shi, Changfa |
author_facet | Wang, Jinke Li, Xiang Lv, Peiqing Shi, Changfa |
author_sort | Wang, Jinke |
collection | PubMed |
description | METHODS: A new SERR-U-Net framework for retinal vessel segmentation is proposed, which leverages technologies including Squeeze-and-Excitation (SE), residual module, and recurrent block. First, the convolution layers of encoder and decoder are modified on the basis of U-Net, and the recurrent block is used to increase the network depth. Second, the residual module is utilized to alleviate the vanishing gradient problem. Finally, to derive more specific vascular features, we employed the SE structure to introduce attention mechanism into the U-shaped network. In addition, enhanced super-resolution generative adversarial networks (ESRGANs) are also deployed to remove the noise of retinal image. RESULTS: The effectiveness of this method was tested on two public datasets, DRIVE and STARE. In the experiment of DRIVE dataset, the accuracy and AUC (area under the curve) of our method were 0.9552 and 0.9784, respectively, and for SATRE dataset, 0.9796 and 0.9859 were achieved, respectively, which proved a high accuracy and promising prospect on clinical assistance. CONCLUSION: An improved U-Net network combining SE, ResNet, and recurrent technologies is developed for automatic vessel segmentation from retinal image. This new model enables an improvement on the accuracy compared to learning-based methods, and its robustness in circumvent challenging cases such as small blood vessels and intersection of vessels is also well demonstrated and validated. |
format | Online Article Text |
id | pubmed-8371614 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-83716142021-08-19 SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image Wang, Jinke Li, Xiang Lv, Peiqing Shi, Changfa Comput Math Methods Med Research Article METHODS: A new SERR-U-Net framework for retinal vessel segmentation is proposed, which leverages technologies including Squeeze-and-Excitation (SE), residual module, and recurrent block. First, the convolution layers of encoder and decoder are modified on the basis of U-Net, and the recurrent block is used to increase the network depth. Second, the residual module is utilized to alleviate the vanishing gradient problem. Finally, to derive more specific vascular features, we employed the SE structure to introduce attention mechanism into the U-shaped network. In addition, enhanced super-resolution generative adversarial networks (ESRGANs) are also deployed to remove the noise of retinal image. RESULTS: The effectiveness of this method was tested on two public datasets, DRIVE and STARE. In the experiment of DRIVE dataset, the accuracy and AUC (area under the curve) of our method were 0.9552 and 0.9784, respectively, and for SATRE dataset, 0.9796 and 0.9859 were achieved, respectively, which proved a high accuracy and promising prospect on clinical assistance. CONCLUSION: An improved U-Net network combining SE, ResNet, and recurrent technologies is developed for automatic vessel segmentation from retinal image. This new model enables an improvement on the accuracy compared to learning-based methods, and its robustness in circumvent challenging cases such as small blood vessels and intersection of vessels is also well demonstrated and validated. Hindawi 2021-08-09 /pmc/articles/PMC8371614/ /pubmed/34422093 http://dx.doi.org/10.1155/2021/5976097 Text en Copyright © 2021 Jinke Wang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Wang, Jinke Li, Xiang Lv, Peiqing Shi, Changfa SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image |
title | SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image |
title_full | SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image |
title_fullStr | SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image |
title_full_unstemmed | SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image |
title_short | SERR-U-Net: Squeeze-and-Excitation Residual and Recurrent Block-Based U-Net for Automatic Vessel Segmentation in Retinal Image |
title_sort | serr-u-net: squeeze-and-excitation residual and recurrent block-based u-net for automatic vessel segmentation in retinal image |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8371614/ https://www.ncbi.nlm.nih.gov/pubmed/34422093 http://dx.doi.org/10.1155/2021/5976097 |
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