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Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer
Background: The synchronous primary right-sided and left-sided colon cancer (sRL-CC) is a peculiar subtype of colorectal cancer. However, the genomic landscape of sRL-CC remains elusive. Methods: Twenty-eight paired tumor samples and their corresponding normal mucosa samples from 14 patients were co...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8371635/ https://www.ncbi.nlm.nih.gov/pubmed/34422903 http://dx.doi.org/10.3389/fmolb.2021.689466 |
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author | Hu, Hanqing Zhang, Qian Huang, Rui Gao, Zhifeng Yuan, Ziming Tang, Qingchao Gao, Feng Wang, Meng Zhang, Weiyuan Ma, Tianyi Qiao, Tianyu Jin, Yinghu Wang, Guiyu |
author_facet | Hu, Hanqing Zhang, Qian Huang, Rui Gao, Zhifeng Yuan, Ziming Tang, Qingchao Gao, Feng Wang, Meng Zhang, Weiyuan Ma, Tianyi Qiao, Tianyu Jin, Yinghu Wang, Guiyu |
author_sort | Hu, Hanqing |
collection | PubMed |
description | Background: The synchronous primary right-sided and left-sided colon cancer (sRL-CC) is a peculiar subtype of colorectal cancer. However, the genomic landscape of sRL-CC remains elusive. Methods: Twenty-eight paired tumor samples and their corresponding normal mucosa samples from 14 patients were collected from the Second Affiliated Hospital of Harbin Medical University from 2011 to 2018. The clinical–pathological data were obtained, and whole-exome sequencing was performed based on formalin-fixed and paraffin-embedded samples of these patients, and then, comprehensive bioinformatic analyses were conducted. Results: Both the lesions of sRL-CC presented dissimilar histological grade and differentiation. Based on sequencing data, few overlapping SNV signatures, onco-driver gene mutations, and SMGs were identified. Moreover, the paired lesions harbored a different distribution of copy number variants (CNVs) and loss of heterozygosity. The clonal architecture analysis demonstrated the polyclonal origin of sRL-CC and inter-cancerous heterogeneity between two lesions. Conclusion: Our work provides evidence that lesions of sRL-CC share few overlapping mutational signatures and CNVs, and may originate from different clones. |
format | Online Article Text |
id | pubmed-8371635 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83716352021-08-19 Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer Hu, Hanqing Zhang, Qian Huang, Rui Gao, Zhifeng Yuan, Ziming Tang, Qingchao Gao, Feng Wang, Meng Zhang, Weiyuan Ma, Tianyi Qiao, Tianyu Jin, Yinghu Wang, Guiyu Front Mol Biosci Molecular Biosciences Background: The synchronous primary right-sided and left-sided colon cancer (sRL-CC) is a peculiar subtype of colorectal cancer. However, the genomic landscape of sRL-CC remains elusive. Methods: Twenty-eight paired tumor samples and their corresponding normal mucosa samples from 14 patients were collected from the Second Affiliated Hospital of Harbin Medical University from 2011 to 2018. The clinical–pathological data were obtained, and whole-exome sequencing was performed based on formalin-fixed and paraffin-embedded samples of these patients, and then, comprehensive bioinformatic analyses were conducted. Results: Both the lesions of sRL-CC presented dissimilar histological grade and differentiation. Based on sequencing data, few overlapping SNV signatures, onco-driver gene mutations, and SMGs were identified. Moreover, the paired lesions harbored a different distribution of copy number variants (CNVs) and loss of heterozygosity. The clonal architecture analysis demonstrated the polyclonal origin of sRL-CC and inter-cancerous heterogeneity between two lesions. Conclusion: Our work provides evidence that lesions of sRL-CC share few overlapping mutational signatures and CNVs, and may originate from different clones. Frontiers Media S.A. 2021-08-04 /pmc/articles/PMC8371635/ /pubmed/34422903 http://dx.doi.org/10.3389/fmolb.2021.689466 Text en Copyright © 2021 Hu, Zhang, Huang, Gao, Yuan, Tang, Gao, Wang, Zhang, Ma, Qiao, Jin and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Hu, Hanqing Zhang, Qian Huang, Rui Gao, Zhifeng Yuan, Ziming Tang, Qingchao Gao, Feng Wang, Meng Zhang, Weiyuan Ma, Tianyi Qiao, Tianyu Jin, Yinghu Wang, Guiyu Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer |
title | Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer |
title_full | Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer |
title_fullStr | Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer |
title_full_unstemmed | Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer |
title_short | Genomic Analysis Reveals Heterogeneity Between Lesions in Synchronous Primary Right-Sided and Left-Sided Colon Cancer |
title_sort | genomic analysis reveals heterogeneity between lesions in synchronous primary right-sided and left-sided colon cancer |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8371635/ https://www.ncbi.nlm.nih.gov/pubmed/34422903 http://dx.doi.org/10.3389/fmolb.2021.689466 |
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