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Identification of Nephrogenic Therapeutic Biomarkers of Wilms Tumor Using Machine Learning

Wilms tumor is the most common renal malignancy in children, with a survival rate of more than 90%; however, treatment outcomes for certain patient subgroups, such as those with bilateral and recurrent diseases, remain significantly below this survival rate. Therefore, it remains essential to identi...

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Detalles Bibliográficos
Autores principales: Liu, Hanxiang, Tang, Chaozhi, Yang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8371641/
https://www.ncbi.nlm.nih.gov/pubmed/34422051
http://dx.doi.org/10.1155/2021/6471169
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author Liu, Hanxiang
Tang, Chaozhi
Yang, Yi
author_facet Liu, Hanxiang
Tang, Chaozhi
Yang, Yi
author_sort Liu, Hanxiang
collection PubMed
description Wilms tumor is the most common renal malignancy in children, with a survival rate of more than 90%; however, treatment outcomes for certain patient subgroups, such as those with bilateral and recurrent diseases, remain significantly below this survival rate. Therefore, it remains essential to identify new biomarkers and develop effective therapeutic strategies. Based on the Therapeutically Applicable Research to Generate Effective Treatments and Gene Expression Omnibus RNA microarray datasets, we have identified eight differentially expressed genes in Wilms tumors as renal-specific in 33 randomly selected adult tumors. The risk model, constructed using survival forest and multivariate Cox regression, can effectively predict the prognosis; the risk score is an independent prognostic factor in Wilms tumor. Gene set enrichment analysis showed that most of the signature genes were involved in regulating human development-related pathways. At the same time, patients in the high-risk group exhibited more sensitive immunological and chemotherapeutic properties than those in the low-risk group. These results provide new insights into personalized and precise Wilms tumor treatment strategies.
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spelling pubmed-83716412021-08-19 Identification of Nephrogenic Therapeutic Biomarkers of Wilms Tumor Using Machine Learning Liu, Hanxiang Tang, Chaozhi Yang, Yi J Oncol Research Article Wilms tumor is the most common renal malignancy in children, with a survival rate of more than 90%; however, treatment outcomes for certain patient subgroups, such as those with bilateral and recurrent diseases, remain significantly below this survival rate. Therefore, it remains essential to identify new biomarkers and develop effective therapeutic strategies. Based on the Therapeutically Applicable Research to Generate Effective Treatments and Gene Expression Omnibus RNA microarray datasets, we have identified eight differentially expressed genes in Wilms tumors as renal-specific in 33 randomly selected adult tumors. The risk model, constructed using survival forest and multivariate Cox regression, can effectively predict the prognosis; the risk score is an independent prognostic factor in Wilms tumor. Gene set enrichment analysis showed that most of the signature genes were involved in regulating human development-related pathways. At the same time, patients in the high-risk group exhibited more sensitive immunological and chemotherapeutic properties than those in the low-risk group. These results provide new insights into personalized and precise Wilms tumor treatment strategies. Hindawi 2021-08-09 /pmc/articles/PMC8371641/ /pubmed/34422051 http://dx.doi.org/10.1155/2021/6471169 Text en Copyright © 2021 Hanxiang Liu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Liu, Hanxiang
Tang, Chaozhi
Yang, Yi
Identification of Nephrogenic Therapeutic Biomarkers of Wilms Tumor Using Machine Learning
title Identification of Nephrogenic Therapeutic Biomarkers of Wilms Tumor Using Machine Learning
title_full Identification of Nephrogenic Therapeutic Biomarkers of Wilms Tumor Using Machine Learning
title_fullStr Identification of Nephrogenic Therapeutic Biomarkers of Wilms Tumor Using Machine Learning
title_full_unstemmed Identification of Nephrogenic Therapeutic Biomarkers of Wilms Tumor Using Machine Learning
title_short Identification of Nephrogenic Therapeutic Biomarkers of Wilms Tumor Using Machine Learning
title_sort identification of nephrogenic therapeutic biomarkers of wilms tumor using machine learning
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8371641/
https://www.ncbi.nlm.nih.gov/pubmed/34422051
http://dx.doi.org/10.1155/2021/6471169
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