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A transferable active-learning strategy for reactive molecular force fields
Predictive molecular simulations require fast, accurate and reactive interatomic potentials. Machine learning offers a promising approach to construct such potentials by fitting energies and forces to high-level quantum-mechanical data, but doing so typically requires considerable human intervention...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8372546/ https://www.ncbi.nlm.nih.gov/pubmed/34476072 http://dx.doi.org/10.1039/d1sc01825f |
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author | Young, Tom A. Johnston-Wood, Tristan Deringer, Volker L. Duarte, Fernanda |
author_facet | Young, Tom A. Johnston-Wood, Tristan Deringer, Volker L. Duarte, Fernanda |
author_sort | Young, Tom A. |
collection | PubMed |
description | Predictive molecular simulations require fast, accurate and reactive interatomic potentials. Machine learning offers a promising approach to construct such potentials by fitting energies and forces to high-level quantum-mechanical data, but doing so typically requires considerable human intervention and data volume. Here we show that, by leveraging hierarchical and active learning, accurate Gaussian Approximation Potential (GAP) models can be developed for diverse chemical systems in an autonomous manner, requiring only hundreds to a few thousand energy and gradient evaluations on a reference potential-energy surface. The approach uses separate intra- and inter-molecular fits and employs a prospective error metric to assess the accuracy of the potentials. We demonstrate applications to a range of molecular systems with relevance to computational organic chemistry: ranging from bulk solvents, a solvated metal ion and a metallocage onwards to chemical reactivity, including a bifurcating Diels–Alder reaction in the gas phase and non-equilibrium dynamics (a model S(N)2 reaction) in explicit solvent. The method provides a route to routinely generating machine-learned force fields for reactive molecular systems. |
format | Online Article Text |
id | pubmed-8372546 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-83725462021-09-01 A transferable active-learning strategy for reactive molecular force fields Young, Tom A. Johnston-Wood, Tristan Deringer, Volker L. Duarte, Fernanda Chem Sci Chemistry Predictive molecular simulations require fast, accurate and reactive interatomic potentials. Machine learning offers a promising approach to construct such potentials by fitting energies and forces to high-level quantum-mechanical data, but doing so typically requires considerable human intervention and data volume. Here we show that, by leveraging hierarchical and active learning, accurate Gaussian Approximation Potential (GAP) models can be developed for diverse chemical systems in an autonomous manner, requiring only hundreds to a few thousand energy and gradient evaluations on a reference potential-energy surface. The approach uses separate intra- and inter-molecular fits and employs a prospective error metric to assess the accuracy of the potentials. We demonstrate applications to a range of molecular systems with relevance to computational organic chemistry: ranging from bulk solvents, a solvated metal ion and a metallocage onwards to chemical reactivity, including a bifurcating Diels–Alder reaction in the gas phase and non-equilibrium dynamics (a model S(N)2 reaction) in explicit solvent. The method provides a route to routinely generating machine-learned force fields for reactive molecular systems. The Royal Society of Chemistry 2021-07-05 /pmc/articles/PMC8372546/ /pubmed/34476072 http://dx.doi.org/10.1039/d1sc01825f Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Young, Tom A. Johnston-Wood, Tristan Deringer, Volker L. Duarte, Fernanda A transferable active-learning strategy for reactive molecular force fields |
title | A transferable active-learning strategy for reactive molecular force fields |
title_full | A transferable active-learning strategy for reactive molecular force fields |
title_fullStr | A transferable active-learning strategy for reactive molecular force fields |
title_full_unstemmed | A transferable active-learning strategy for reactive molecular force fields |
title_short | A transferable active-learning strategy for reactive molecular force fields |
title_sort | transferable active-learning strategy for reactive molecular force fields |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8372546/ https://www.ncbi.nlm.nih.gov/pubmed/34476072 http://dx.doi.org/10.1039/d1sc01825f |
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