Cargando…
A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma
Lung adenocarcinoma (LUAD) is the most common subtype of lung cancer, but the prognosis of LUAD patients remains unsatisfactory. Here, we retrieved the RNA-seq data of LUAD cohort from The Cancer Genome Atlas (TCGA) database and then identified differentially expressed immune-related lncRNAs (DEirln...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8373953/ https://www.ncbi.nlm.nih.gov/pubmed/34408216 http://dx.doi.org/10.1038/s41598-021-96236-4 |
_version_ | 1783740015030829056 |
---|---|
author | Liu, Yang Wu, Qiuhong Fan, Xuejiao Li, Wen Li, Xiaogang Zhu, Hui Zhou, Qinghua Yu, Jinming |
author_facet | Liu, Yang Wu, Qiuhong Fan, Xuejiao Li, Wen Li, Xiaogang Zhu, Hui Zhou, Qinghua Yu, Jinming |
author_sort | Liu, Yang |
collection | PubMed |
description | Lung adenocarcinoma (LUAD) is the most common subtype of lung cancer, but the prognosis of LUAD patients remains unsatisfactory. Here, we retrieved the RNA-seq data of LUAD cohort from The Cancer Genome Atlas (TCGA) database and then identified differentially expressed immune-related lncRNAs (DEirlncRNAs) between LUAD and normal controls. Based on a new method of cyclically single pairing along with a 0-or-1 matrix, we constructed a novel prognostic signature of 8 DEirlncRNA pairs in LUAD with no dependence upon specific expression levels of lncRNAs. This prognostic model exhibited significant power in distinguishing good or poor prognosis of LUAD patients and the values of the area under the curve (AUC) were all over 0.70 in 1, 3, 5 years receiver operating characteristic (ROC) curves. Moreover, the risk score of the model could serve as an independent prognostic factor for patients with LUAD. In addition, the risk model was significantly associated with clinicopathological characteristics, tumor-infiltrating immune cells, immune-related molecules and sensitivity of anti-tumor drugs. This novel signature of DEirlncRNA pairs in LUAD, which did not require specific expression levels of lncRNAs, might be used to guide the administration of patients with LUAD in clinical practice. |
format | Online Article Text |
id | pubmed-8373953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-83739532021-08-20 A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma Liu, Yang Wu, Qiuhong Fan, Xuejiao Li, Wen Li, Xiaogang Zhu, Hui Zhou, Qinghua Yu, Jinming Sci Rep Article Lung adenocarcinoma (LUAD) is the most common subtype of lung cancer, but the prognosis of LUAD patients remains unsatisfactory. Here, we retrieved the RNA-seq data of LUAD cohort from The Cancer Genome Atlas (TCGA) database and then identified differentially expressed immune-related lncRNAs (DEirlncRNAs) between LUAD and normal controls. Based on a new method of cyclically single pairing along with a 0-or-1 matrix, we constructed a novel prognostic signature of 8 DEirlncRNA pairs in LUAD with no dependence upon specific expression levels of lncRNAs. This prognostic model exhibited significant power in distinguishing good or poor prognosis of LUAD patients and the values of the area under the curve (AUC) were all over 0.70 in 1, 3, 5 years receiver operating characteristic (ROC) curves. Moreover, the risk score of the model could serve as an independent prognostic factor for patients with LUAD. In addition, the risk model was significantly associated with clinicopathological characteristics, tumor-infiltrating immune cells, immune-related molecules and sensitivity of anti-tumor drugs. This novel signature of DEirlncRNA pairs in LUAD, which did not require specific expression levels of lncRNAs, might be used to guide the administration of patients with LUAD in clinical practice. Nature Publishing Group UK 2021-08-18 /pmc/articles/PMC8373953/ /pubmed/34408216 http://dx.doi.org/10.1038/s41598-021-96236-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Liu, Yang Wu, Qiuhong Fan, Xuejiao Li, Wen Li, Xiaogang Zhu, Hui Zhou, Qinghua Yu, Jinming A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma |
title | A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma |
title_full | A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma |
title_fullStr | A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma |
title_full_unstemmed | A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma |
title_short | A novel prognostic signature of immune-related lncRNA pairs in lung adenocarcinoma |
title_sort | novel prognostic signature of immune-related lncrna pairs in lung adenocarcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8373953/ https://www.ncbi.nlm.nih.gov/pubmed/34408216 http://dx.doi.org/10.1038/s41598-021-96236-4 |
work_keys_str_mv | AT liuyang anovelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT wuqiuhong anovelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT fanxuejiao anovelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT liwen anovelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT lixiaogang anovelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT zhuhui anovelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT zhouqinghua anovelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT yujinming anovelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT liuyang novelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT wuqiuhong novelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT fanxuejiao novelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT liwen novelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT lixiaogang novelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT zhuhui novelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT zhouqinghua novelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma AT yujinming novelprognosticsignatureofimmunerelatedlncrnapairsinlungadenocarcinoma |