Cargando…

Fractal dimension analysis: A new tool for analyzing colony-forming units

The gold standard for quantifying bacteria both in routine diagnostics and in research is plating followed by count of colony-forming units (CFU). But, manual CFU counting on plates is time-consuming and subjective. We evaluated fractal dimension as a new methodology for evaluating CFU. Twenty fragm...

Descripción completa

Detalles Bibliográficos
Autores principales: Nai, Gisele Alborghetti, Martelli, Cesar Alberto TALAvera, Medina, Denis Aloísio Lopes, Oliveira, Mayla Silva Cayres de, Caldeira, Isadora Delfino, Henriques, Bruno Carvalho, Portelinha, Maria Júlia Schadeck, Eller, Lizziane Kretli Winkelstroter, Marques, Mariângela Esther Alencar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8374233/
https://www.ncbi.nlm.nih.gov/pubmed/34434751
http://dx.doi.org/10.1016/j.mex.2021.101228
_version_ 1783740071448412160
author Nai, Gisele Alborghetti
Martelli, Cesar Alberto TALAvera
Medina, Denis Aloísio Lopes
Oliveira, Mayla Silva Cayres de
Caldeira, Isadora Delfino
Henriques, Bruno Carvalho
Portelinha, Maria Júlia Schadeck
Eller, Lizziane Kretli Winkelstroter
Marques, Mariângela Esther Alencar
author_facet Nai, Gisele Alborghetti
Martelli, Cesar Alberto TALAvera
Medina, Denis Aloísio Lopes
Oliveira, Mayla Silva Cayres de
Caldeira, Isadora Delfino
Henriques, Bruno Carvalho
Portelinha, Maria Júlia Schadeck
Eller, Lizziane Kretli Winkelstroter
Marques, Mariângela Esther Alencar
author_sort Nai, Gisele Alborghetti
collection PubMed
description The gold standard for quantifying bacteria both in routine diagnostics and in research is plating followed by count of colony-forming units (CFU). But, manual CFU counting on plates is time-consuming and subjective. We evaluated fractal dimension as a new methodology for evaluating CFU. Twenty fragments of expanded polytetrafluoroethylene (ePTFE) synthetic vascular prosthesis and 20 silicone prostheses were embedded in bacterial suspensions and incubated. The prostheses were then sown in solid culture medium and incubated for 48 h. Petri dishes were photographed and analyzed by fractal dimension. There was correlation between the number of CFU in manual counting and the fractal dimension analysis (p = 0.0001). We demonstrated that fractal dimension is a useful method for microbiological analyses in researches. It makes CFU analysis easier and faster and can be used regardless of the culture medium. • Petri dishes with different bacterial colonies were photographed with a digital camera under natural light. • The images were binarized and analyzed with ImageJ(Ⓡ)'s “fractal dimension” tool. • Fractal dimension analysis showed to be a good tool for evaluating the amount of colony-forming unit.
format Online
Article
Text
id pubmed-8374233
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-83742332021-08-24 Fractal dimension analysis: A new tool for analyzing colony-forming units Nai, Gisele Alborghetti Martelli, Cesar Alberto TALAvera Medina, Denis Aloísio Lopes Oliveira, Mayla Silva Cayres de Caldeira, Isadora Delfino Henriques, Bruno Carvalho Portelinha, Maria Júlia Schadeck Eller, Lizziane Kretli Winkelstroter Marques, Mariângela Esther Alencar MethodsX Method Article The gold standard for quantifying bacteria both in routine diagnostics and in research is plating followed by count of colony-forming units (CFU). But, manual CFU counting on plates is time-consuming and subjective. We evaluated fractal dimension as a new methodology for evaluating CFU. Twenty fragments of expanded polytetrafluoroethylene (ePTFE) synthetic vascular prosthesis and 20 silicone prostheses were embedded in bacterial suspensions and incubated. The prostheses were then sown in solid culture medium and incubated for 48 h. Petri dishes were photographed and analyzed by fractal dimension. There was correlation between the number of CFU in manual counting and the fractal dimension analysis (p = 0.0001). We demonstrated that fractal dimension is a useful method for microbiological analyses in researches. It makes CFU analysis easier and faster and can be used regardless of the culture medium. • Petri dishes with different bacterial colonies were photographed with a digital camera under natural light. • The images were binarized and analyzed with ImageJ(Ⓡ)'s “fractal dimension” tool. • Fractal dimension analysis showed to be a good tool for evaluating the amount of colony-forming unit. Elsevier 2021-01-12 /pmc/articles/PMC8374233/ /pubmed/34434751 http://dx.doi.org/10.1016/j.mex.2021.101228 Text en © 2021 The Author(s). Published by Elsevier B.V. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Method Article
Nai, Gisele Alborghetti
Martelli, Cesar Alberto TALAvera
Medina, Denis Aloísio Lopes
Oliveira, Mayla Silva Cayres de
Caldeira, Isadora Delfino
Henriques, Bruno Carvalho
Portelinha, Maria Júlia Schadeck
Eller, Lizziane Kretli Winkelstroter
Marques, Mariângela Esther Alencar
Fractal dimension analysis: A new tool for analyzing colony-forming units
title Fractal dimension analysis: A new tool for analyzing colony-forming units
title_full Fractal dimension analysis: A new tool for analyzing colony-forming units
title_fullStr Fractal dimension analysis: A new tool for analyzing colony-forming units
title_full_unstemmed Fractal dimension analysis: A new tool for analyzing colony-forming units
title_short Fractal dimension analysis: A new tool for analyzing colony-forming units
title_sort fractal dimension analysis: a new tool for analyzing colony-forming units
topic Method Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8374233/
https://www.ncbi.nlm.nih.gov/pubmed/34434751
http://dx.doi.org/10.1016/j.mex.2021.101228
work_keys_str_mv AT naigiselealborghetti fractaldimensionanalysisanewtoolforanalyzingcolonyformingunits
AT martellicesaralbertotalavera fractaldimensionanalysisanewtoolforanalyzingcolonyformingunits
AT medinadenisaloisiolopes fractaldimensionanalysisanewtoolforanalyzingcolonyformingunits
AT oliveiramaylasilvacayresde fractaldimensionanalysisanewtoolforanalyzingcolonyformingunits
AT caldeiraisadoradelfino fractaldimensionanalysisanewtoolforanalyzingcolonyformingunits
AT henriquesbrunocarvalho fractaldimensionanalysisanewtoolforanalyzingcolonyformingunits
AT portelinhamariajuliaschadeck fractaldimensionanalysisanewtoolforanalyzingcolonyformingunits
AT ellerlizzianekretliwinkelstroter fractaldimensionanalysisanewtoolforanalyzingcolonyformingunits
AT marquesmariangelaestheralencar fractaldimensionanalysisanewtoolforanalyzingcolonyformingunits