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Protocol optimization for simultaneous DNA and RNA co-extraction from single hard tick specimens

Hard ticks are important vectors of DNA- and RNA-based infectious microorganisms, but they also host complex microbial communities in which pathogens and symbionts can interact among each other and with the arthropod host itself. Molecular investigations on ticks and their hosted microorganisms are...

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Autores principales: Cafiso, Alessandra, Chiappa, Giulia, Luzzago, Camilla, Koni, Anita, Bonato, Daniele, Koleci, Xhelil, Bazzocchi, Chiara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8374261/
https://www.ncbi.nlm.nih.gov/pubmed/34434835
http://dx.doi.org/10.1016/j.mex.2021.101315
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author Cafiso, Alessandra
Chiappa, Giulia
Luzzago, Camilla
Koni, Anita
Bonato, Daniele
Koleci, Xhelil
Bazzocchi, Chiara
author_facet Cafiso, Alessandra
Chiappa, Giulia
Luzzago, Camilla
Koni, Anita
Bonato, Daniele
Koleci, Xhelil
Bazzocchi, Chiara
author_sort Cafiso, Alessandra
collection PubMed
description Hard ticks are important vectors of DNA- and RNA-based infectious microorganisms, but they also host complex microbial communities in which pathogens and symbionts can interact among each other and with the arthropod host itself. Molecular investigations on ticks and their hosted microorganisms are important for human and animal health. These analyses often imply the use of both DNA and RNA, with prompt preservation of nucleic acids after collection, and safe handling in case of low-level containment. Several commercial kits are available for the co-extraction of DNA and RNA; however, cost can be a limiting factor for the choice of this method, which also require additional reagents for nucleic acids preservation before extraction. Additionally, extraction buffers provided in commercial kits do not guarantee the safe handling in case of hazardous biological material. With the aim of epidemiological screenings for tick-borne pathogens and gene expression analyses focused on the relationship among ticks and their microbial communities, an optimized protocol for DNA and RNA co-extraction from single adult hard tick specimens (Ixodidae) has been developed using TRIzol(Ⓡ): • DNA/RNA co-extraction from adult hard tick specimens; • Safe sample handling; • Obtaining DNA and RNA simultaneously for diagnostic procedures and RNA for gene expression/transcriptomic analyses.
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spelling pubmed-83742612021-08-24 Protocol optimization for simultaneous DNA and RNA co-extraction from single hard tick specimens Cafiso, Alessandra Chiappa, Giulia Luzzago, Camilla Koni, Anita Bonato, Daniele Koleci, Xhelil Bazzocchi, Chiara MethodsX Method Article Hard ticks are important vectors of DNA- and RNA-based infectious microorganisms, but they also host complex microbial communities in which pathogens and symbionts can interact among each other and with the arthropod host itself. Molecular investigations on ticks and their hosted microorganisms are important for human and animal health. These analyses often imply the use of both DNA and RNA, with prompt preservation of nucleic acids after collection, and safe handling in case of low-level containment. Several commercial kits are available for the co-extraction of DNA and RNA; however, cost can be a limiting factor for the choice of this method, which also require additional reagents for nucleic acids preservation before extraction. Additionally, extraction buffers provided in commercial kits do not guarantee the safe handling in case of hazardous biological material. With the aim of epidemiological screenings for tick-borne pathogens and gene expression analyses focused on the relationship among ticks and their microbial communities, an optimized protocol for DNA and RNA co-extraction from single adult hard tick specimens (Ixodidae) has been developed using TRIzol(Ⓡ): • DNA/RNA co-extraction from adult hard tick specimens; • Safe sample handling; • Obtaining DNA and RNA simultaneously for diagnostic procedures and RNA for gene expression/transcriptomic analyses. Elsevier 2021-03-21 /pmc/articles/PMC8374261/ /pubmed/34434835 http://dx.doi.org/10.1016/j.mex.2021.101315 Text en © 2021 The Author(s). Published by Elsevier B.V. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Method Article
Cafiso, Alessandra
Chiappa, Giulia
Luzzago, Camilla
Koni, Anita
Bonato, Daniele
Koleci, Xhelil
Bazzocchi, Chiara
Protocol optimization for simultaneous DNA and RNA co-extraction from single hard tick specimens
title Protocol optimization for simultaneous DNA and RNA co-extraction from single hard tick specimens
title_full Protocol optimization for simultaneous DNA and RNA co-extraction from single hard tick specimens
title_fullStr Protocol optimization for simultaneous DNA and RNA co-extraction from single hard tick specimens
title_full_unstemmed Protocol optimization for simultaneous DNA and RNA co-extraction from single hard tick specimens
title_short Protocol optimization for simultaneous DNA and RNA co-extraction from single hard tick specimens
title_sort protocol optimization for simultaneous dna and rna co-extraction from single hard tick specimens
topic Method Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8374261/
https://www.ncbi.nlm.nih.gov/pubmed/34434835
http://dx.doi.org/10.1016/j.mex.2021.101315
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