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Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME
Neuroactive substances are the largest group of chemicals detected in European surface waters. Mixtures of neuroactive substances occurring at low concentrations can induce adverse neurological effects in humans and organisms in the environment. Therefore, there is a need to develop new screening to...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8374338/ https://www.ncbi.nlm.nih.gov/pubmed/34434841 http://dx.doi.org/10.1016/j.mex.2021.101330 |
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author | Ogungbemi, Afolarin O. Teixido, Elisabet Massei, Riccardo Scholz, Stefan Küster, Eberhard |
author_facet | Ogungbemi, Afolarin O. Teixido, Elisabet Massei, Riccardo Scholz, Stefan Küster, Eberhard |
author_sort | Ogungbemi, Afolarin O. |
collection | PubMed |
description | Neuroactive substances are the largest group of chemicals detected in European surface waters. Mixtures of neuroactive substances occurring at low concentrations can induce adverse neurological effects in humans and organisms in the environment. Therefore, there is a need to develop new screening tools to detect these chemicals. Measurement of behavior or motor effects in rodents and fish are usually performed to assess potential neurotoxicity for risk assessment. However, due to pain and stress inflicted on these animals, the scientific community is advocating for new alternative methods based on the 3R principle (reduce, replace and refine). As a result, the behavior measurement of early stages of zebrafish embryos such as locomotor response, photomotor response and spontaneous tail coiling are considered as a valid alternative to adult animal testing. In this study, we developed a workflow to investigate the spontaneous tail coiling (STC) of zebrafish embryos and to accurately measure the STC effect in the KNIME software. We validated the STC protocol with 3 substances (abamectin, chlorpyrifos-oxon and pyracostrobin) which have different mechanisms of action. The KNIME workflow combined with easy and cost-effective method of video acquisition makes this STC protocol a valuable method for neurotoxicity testing. • Video acquisition duration of 60 s at 25 ± 1 hpf was used; • 20 embryos exposed per dish and acclimatized for 30 min before video acquisition; • Capability to inspect and correct errors for high accuracy. |
format | Online Article Text |
id | pubmed-8374338 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-83743382021-08-24 Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME Ogungbemi, Afolarin O. Teixido, Elisabet Massei, Riccardo Scholz, Stefan Küster, Eberhard MethodsX Method Article Neuroactive substances are the largest group of chemicals detected in European surface waters. Mixtures of neuroactive substances occurring at low concentrations can induce adverse neurological effects in humans and organisms in the environment. Therefore, there is a need to develop new screening tools to detect these chemicals. Measurement of behavior or motor effects in rodents and fish are usually performed to assess potential neurotoxicity for risk assessment. However, due to pain and stress inflicted on these animals, the scientific community is advocating for new alternative methods based on the 3R principle (reduce, replace and refine). As a result, the behavior measurement of early stages of zebrafish embryos such as locomotor response, photomotor response and spontaneous tail coiling are considered as a valid alternative to adult animal testing. In this study, we developed a workflow to investigate the spontaneous tail coiling (STC) of zebrafish embryos and to accurately measure the STC effect in the KNIME software. We validated the STC protocol with 3 substances (abamectin, chlorpyrifos-oxon and pyracostrobin) which have different mechanisms of action. The KNIME workflow combined with easy and cost-effective method of video acquisition makes this STC protocol a valuable method for neurotoxicity testing. • Video acquisition duration of 60 s at 25 ± 1 hpf was used; • 20 embryos exposed per dish and acclimatized for 30 min before video acquisition; • Capability to inspect and correct errors for high accuracy. Elsevier 2021-04-04 /pmc/articles/PMC8374338/ /pubmed/34434841 http://dx.doi.org/10.1016/j.mex.2021.101330 Text en © 2021 The Authors. Published by Elsevier B.V. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Method Article Ogungbemi, Afolarin O. Teixido, Elisabet Massei, Riccardo Scholz, Stefan Küster, Eberhard Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME |
title | Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME |
title_full | Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME |
title_fullStr | Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME |
title_full_unstemmed | Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME |
title_short | Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME |
title_sort | automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in knime |
topic | Method Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8374338/ https://www.ncbi.nlm.nih.gov/pubmed/34434841 http://dx.doi.org/10.1016/j.mex.2021.101330 |
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