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African Swine Fever in the Russian Far East (2019–2020): Spatio-Temporal Analysis and Implications for Wild Ungulates

African swine fever (ASF) is an emerging viral contagious disease affecting domestic pigs (DP) and wild boar (WB). ASF causes significant economic damage to the pig industry worldwide due to nearly 100% mortality and the absence of medical treatments. Since 2019, an intensive spread of ASF has been...

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Autores principales: Zakharova, Olga I., Titov, Ilya A., Gogin, Andrey E., Sevskikh, Timofey A., Korennoy, Fedor I., Kolbasov, Denis V., Abrahamyan, Levon, Blokhin, Andrey A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8374597/
https://www.ncbi.nlm.nih.gov/pubmed/34422950
http://dx.doi.org/10.3389/fvets.2021.723081
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author Zakharova, Olga I.
Titov, Ilya A.
Gogin, Andrey E.
Sevskikh, Timofey A.
Korennoy, Fedor I.
Kolbasov, Denis V.
Abrahamyan, Levon
Blokhin, Andrey A.
author_facet Zakharova, Olga I.
Titov, Ilya A.
Gogin, Andrey E.
Sevskikh, Timofey A.
Korennoy, Fedor I.
Kolbasov, Denis V.
Abrahamyan, Levon
Blokhin, Andrey A.
author_sort Zakharova, Olga I.
collection PubMed
description African swine fever (ASF) is an emerging viral contagious disease affecting domestic pigs (DP) and wild boar (WB). ASF causes significant economic damage to the pig industry worldwide due to nearly 100% mortality and the absence of medical treatments. Since 2019, an intensive spread of ASF has been observed in the Russian Far East region. This spread raises concerns for epidemiologists and ecologists given the potential threat to the WB population, which is an essential member of the region's wild ungulates and provides a notable share of food resources for predatory species. This study aims to determine the genotype of ASF virus circulating in the region, reveal the spatio-temporal patterns of the ASF outbreaks' emergence, and assess the potential reduction of the regional fauna because of expected depopulation of WB. The first historical case of ASF in the study region was caused by an African swine fever virus (ASFV) isolated from DPs and belonging to Genotype 2, CVR1; IGR-2 (TRS +). Sequencing results showed no significant differences among ASFV strains currently circulating in the Russian Federation, Europe, and China. The spatiotemporal analysis with the space-time permutations model demonstrated the presence of six statistically significant clusters of ASF outbreaks with three clusters in DPs and one cluster in WBs. DP outbreaks prevail in the north-west regions of the study area, while northern regions demonstrate a mixture of DP and WB outbreaks. Colocation analysis did not reveal a statistically significant pattern of grouping of one category of outbreaks around the others. The possible damage to the region's fauna was assessed by modeling the total body mass of wild ungulates before and after the wild boars' depopulation, considering a threshold density of WB population of 0.025 head/km(2), according to the currently in force National Plan on the ASF Eradication in Russia. The results suggest the total mass of ungulates of the entire study region will likely decrease by 8.4% (95% CI: 4.1–13.0%), while it may decrease by 33.6% (19.3–46.1%) in the Primorsky Krai, thereby posing an undeniable threat to the predatory species of the region.
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spelling pubmed-83745972021-08-20 African Swine Fever in the Russian Far East (2019–2020): Spatio-Temporal Analysis and Implications for Wild Ungulates Zakharova, Olga I. Titov, Ilya A. Gogin, Andrey E. Sevskikh, Timofey A. Korennoy, Fedor I. Kolbasov, Denis V. Abrahamyan, Levon Blokhin, Andrey A. Front Vet Sci Veterinary Science African swine fever (ASF) is an emerging viral contagious disease affecting domestic pigs (DP) and wild boar (WB). ASF causes significant economic damage to the pig industry worldwide due to nearly 100% mortality and the absence of medical treatments. Since 2019, an intensive spread of ASF has been observed in the Russian Far East region. This spread raises concerns for epidemiologists and ecologists given the potential threat to the WB population, which is an essential member of the region's wild ungulates and provides a notable share of food resources for predatory species. This study aims to determine the genotype of ASF virus circulating in the region, reveal the spatio-temporal patterns of the ASF outbreaks' emergence, and assess the potential reduction of the regional fauna because of expected depopulation of WB. The first historical case of ASF in the study region was caused by an African swine fever virus (ASFV) isolated from DPs and belonging to Genotype 2, CVR1; IGR-2 (TRS +). Sequencing results showed no significant differences among ASFV strains currently circulating in the Russian Federation, Europe, and China. The spatiotemporal analysis with the space-time permutations model demonstrated the presence of six statistically significant clusters of ASF outbreaks with three clusters in DPs and one cluster in WBs. DP outbreaks prevail in the north-west regions of the study area, while northern regions demonstrate a mixture of DP and WB outbreaks. Colocation analysis did not reveal a statistically significant pattern of grouping of one category of outbreaks around the others. The possible damage to the region's fauna was assessed by modeling the total body mass of wild ungulates before and after the wild boars' depopulation, considering a threshold density of WB population of 0.025 head/km(2), according to the currently in force National Plan on the ASF Eradication in Russia. The results suggest the total mass of ungulates of the entire study region will likely decrease by 8.4% (95% CI: 4.1–13.0%), while it may decrease by 33.6% (19.3–46.1%) in the Primorsky Krai, thereby posing an undeniable threat to the predatory species of the region. Frontiers Media S.A. 2021-08-05 /pmc/articles/PMC8374597/ /pubmed/34422950 http://dx.doi.org/10.3389/fvets.2021.723081 Text en Copyright © 2021 Zakharova, Titov, Gogin, Sevskikh, Korennoy, Kolbasov, Abrahamyan and Blokhin. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Veterinary Science
Zakharova, Olga I.
Titov, Ilya A.
Gogin, Andrey E.
Sevskikh, Timofey A.
Korennoy, Fedor I.
Kolbasov, Denis V.
Abrahamyan, Levon
Blokhin, Andrey A.
African Swine Fever in the Russian Far East (2019–2020): Spatio-Temporal Analysis and Implications for Wild Ungulates
title African Swine Fever in the Russian Far East (2019–2020): Spatio-Temporal Analysis and Implications for Wild Ungulates
title_full African Swine Fever in the Russian Far East (2019–2020): Spatio-Temporal Analysis and Implications for Wild Ungulates
title_fullStr African Swine Fever in the Russian Far East (2019–2020): Spatio-Temporal Analysis and Implications for Wild Ungulates
title_full_unstemmed African Swine Fever in the Russian Far East (2019–2020): Spatio-Temporal Analysis and Implications for Wild Ungulates
title_short African Swine Fever in the Russian Far East (2019–2020): Spatio-Temporal Analysis and Implications for Wild Ungulates
title_sort african swine fever in the russian far east (2019–2020): spatio-temporal analysis and implications for wild ungulates
topic Veterinary Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8374597/
https://www.ncbi.nlm.nih.gov/pubmed/34422950
http://dx.doi.org/10.3389/fvets.2021.723081
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