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Hydrogen Bonds and n → π* Interactions in the Acetylation of Propranolol Catalyzed by Candida antarctica Lipase B: A QTAIM Study
[Image: see text] Enzyme–substrate interactions play a crucial role in enzymatic catalysis. Quantum theory of atoms in molecules (QTAIM) calculations are extremely useful in computational studies of these interactions because they provide very detailed information about the strengths and types of mo...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8375099/ https://www.ncbi.nlm.nih.gov/pubmed/34423207 http://dx.doi.org/10.1021/acsomega.1c02559 |
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author | Rincón, David A. Doerr, Markus Daza, Martha C. |
author_facet | Rincón, David A. Doerr, Markus Daza, Martha C. |
author_sort | Rincón, David A. |
collection | PubMed |
description | [Image: see text] Enzyme–substrate interactions play a crucial role in enzymatic catalysis. Quantum theory of atoms in molecules (QTAIM) calculations are extremely useful in computational studies of these interactions because they provide very detailed information about the strengths and types of molecular interactions. QTAIM also provides information about the intramolecular changes that occur in the catalytic reaction. Here, we analyze the enzyme–substrate interactions and the topological properties of the electron density in the enantioselective step of the acylation of (R,S)-propranolol, an aminoalcohol with therapeutic applications, catalyzed by Candida antarctica lipase B. Eight reaction paths (four for each enantiomer) are investigated and the energies, atomic charges, hydrogen bonds, and n → π* interactions of propranolol, the catalytic triad (composed of D187, H224, and S105), and the oxyanion hole are analyzed. It is found that D187 acts as an electron density reservoir for H224, and H224 acts as an electron density reservoir for the active site of the protein. It releases electron density when the tetrahedral intermediate is formed from the Michaelis complex and receives it when the enzyme–product complex is formed. Hydrogen bonds can be grouped into noncovalent and covalent hydrogen bonds. The latter are stronger and more important for the reaction than the former. We also found weak n → π* interactions, which are characterized by QTAIM and the natural bond orbital (NBO) analysis. |
format | Online Article Text |
id | pubmed-8375099 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-83750992021-08-20 Hydrogen Bonds and n → π* Interactions in the Acetylation of Propranolol Catalyzed by Candida antarctica Lipase B: A QTAIM Study Rincón, David A. Doerr, Markus Daza, Martha C. ACS Omega [Image: see text] Enzyme–substrate interactions play a crucial role in enzymatic catalysis. Quantum theory of atoms in molecules (QTAIM) calculations are extremely useful in computational studies of these interactions because they provide very detailed information about the strengths and types of molecular interactions. QTAIM also provides information about the intramolecular changes that occur in the catalytic reaction. Here, we analyze the enzyme–substrate interactions and the topological properties of the electron density in the enantioselective step of the acylation of (R,S)-propranolol, an aminoalcohol with therapeutic applications, catalyzed by Candida antarctica lipase B. Eight reaction paths (four for each enantiomer) are investigated and the energies, atomic charges, hydrogen bonds, and n → π* interactions of propranolol, the catalytic triad (composed of D187, H224, and S105), and the oxyanion hole are analyzed. It is found that D187 acts as an electron density reservoir for H224, and H224 acts as an electron density reservoir for the active site of the protein. It releases electron density when the tetrahedral intermediate is formed from the Michaelis complex and receives it when the enzyme–product complex is formed. Hydrogen bonds can be grouped into noncovalent and covalent hydrogen bonds. The latter are stronger and more important for the reaction than the former. We also found weak n → π* interactions, which are characterized by QTAIM and the natural bond orbital (NBO) analysis. American Chemical Society 2021-08-03 /pmc/articles/PMC8375099/ /pubmed/34423207 http://dx.doi.org/10.1021/acsomega.1c02559 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Rincón, David A. Doerr, Markus Daza, Martha C. Hydrogen Bonds and n → π* Interactions in the Acetylation of Propranolol Catalyzed by Candida antarctica Lipase B: A QTAIM Study |
title | Hydrogen Bonds and n → π* Interactions
in the Acetylation of Propranolol Catalyzed by Candida
antarctica Lipase B: A QTAIM Study |
title_full | Hydrogen Bonds and n → π* Interactions
in the Acetylation of Propranolol Catalyzed by Candida
antarctica Lipase B: A QTAIM Study |
title_fullStr | Hydrogen Bonds and n → π* Interactions
in the Acetylation of Propranolol Catalyzed by Candida
antarctica Lipase B: A QTAIM Study |
title_full_unstemmed | Hydrogen Bonds and n → π* Interactions
in the Acetylation of Propranolol Catalyzed by Candida
antarctica Lipase B: A QTAIM Study |
title_short | Hydrogen Bonds and n → π* Interactions
in the Acetylation of Propranolol Catalyzed by Candida
antarctica Lipase B: A QTAIM Study |
title_sort | hydrogen bonds and n → π* interactions
in the acetylation of propranolol catalyzed by candida
antarctica lipase b: a qtaim study |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8375099/ https://www.ncbi.nlm.nih.gov/pubmed/34423207 http://dx.doi.org/10.1021/acsomega.1c02559 |
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