Cargando…
Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
Background: Hepatocellular carcinoma (HCC) is the sixth most common malignancy with a high mortality worldwide. N6-methyladenosine (m6A) may participate extensively in tumor progression. Methods: To reveal the landscape of tumor immune microenvironment (TIME), ESTIMATE analysis, ssGSEA algorithm, an...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8375309/ https://www.ncbi.nlm.nih.gov/pubmed/34422799 http://dx.doi.org/10.3389/fcell.2021.669145 |
_version_ | 1783740295714701312 |
---|---|
author | Xu, Qianhui Xu, Hao Deng, Rongshan Li, Nanjun Mu, Ruiqi Qi, Zhixuan Shen, Yunuo Wang, Zijie Wen, Jingchao Zhao, Jiaxin Weng, Di Huang, Wen |
author_facet | Xu, Qianhui Xu, Hao Deng, Rongshan Li, Nanjun Mu, Ruiqi Qi, Zhixuan Shen, Yunuo Wang, Zijie Wen, Jingchao Zhao, Jiaxin Weng, Di Huang, Wen |
author_sort | Xu, Qianhui |
collection | PubMed |
description | Background: Hepatocellular carcinoma (HCC) is the sixth most common malignancy with a high mortality worldwide. N6-methyladenosine (m6A) may participate extensively in tumor progression. Methods: To reveal the landscape of tumor immune microenvironment (TIME), ESTIMATE analysis, ssGSEA algorithm, and the CIBERSORT method were used. Taking advantage of consensus clustering, two different HCC categories were screened. We analyzed the correlation of clustering results with TIME and immunotherapy. Then, we yielded a risk signature by systematical bioinformatics analyses. Immunophenoscore (IPS) was implemented to estimate the immunotherapeutic significance of risk signature. Results: The m6A-based clusters were significantly correlated with overall survival (OS), immune score, immunological signature, immune infiltrating, and ICB-associated genes. Risk signature possessed robust prognostic validity and significantly correlated with TIME context. IPS was employed as a surrogate of immunotherapeutic outcome, and patients with low-risk scores showed significantly higher immunophenoscores. Conclusion: Collectively, m6A-based clustering subtype and signature was a robust prognostic indicator and correlated with TIME and immunotherapy, providing novel insight into antitumor management and prognostic prediction in HCC. |
format | Online Article Text |
id | pubmed-8375309 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83753092021-08-20 Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy Xu, Qianhui Xu, Hao Deng, Rongshan Li, Nanjun Mu, Ruiqi Qi, Zhixuan Shen, Yunuo Wang, Zijie Wen, Jingchao Zhao, Jiaxin Weng, Di Huang, Wen Front Cell Dev Biol Cell and Developmental Biology Background: Hepatocellular carcinoma (HCC) is the sixth most common malignancy with a high mortality worldwide. N6-methyladenosine (m6A) may participate extensively in tumor progression. Methods: To reveal the landscape of tumor immune microenvironment (TIME), ESTIMATE analysis, ssGSEA algorithm, and the CIBERSORT method were used. Taking advantage of consensus clustering, two different HCC categories were screened. We analyzed the correlation of clustering results with TIME and immunotherapy. Then, we yielded a risk signature by systematical bioinformatics analyses. Immunophenoscore (IPS) was implemented to estimate the immunotherapeutic significance of risk signature. Results: The m6A-based clusters were significantly correlated with overall survival (OS), immune score, immunological signature, immune infiltrating, and ICB-associated genes. Risk signature possessed robust prognostic validity and significantly correlated with TIME context. IPS was employed as a surrogate of immunotherapeutic outcome, and patients with low-risk scores showed significantly higher immunophenoscores. Conclusion: Collectively, m6A-based clustering subtype and signature was a robust prognostic indicator and correlated with TIME and immunotherapy, providing novel insight into antitumor management and prognostic prediction in HCC. Frontiers Media S.A. 2021-08-05 /pmc/articles/PMC8375309/ /pubmed/34422799 http://dx.doi.org/10.3389/fcell.2021.669145 Text en Copyright © 2021 Xu, Xu, Deng, Li, Mu, Qi, Shen, Wang, Wen, Zhao, Weng and Huang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Xu, Qianhui Xu, Hao Deng, Rongshan Li, Nanjun Mu, Ruiqi Qi, Zhixuan Shen, Yunuo Wang, Zijie Wen, Jingchao Zhao, Jiaxin Weng, Di Huang, Wen Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy |
title | Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy |
title_full | Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy |
title_fullStr | Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy |
title_full_unstemmed | Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy |
title_short | Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy |
title_sort | landscape of prognostic m6a rna methylation regulators in hepatocellular carcinoma to aid immunotherapy |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8375309/ https://www.ncbi.nlm.nih.gov/pubmed/34422799 http://dx.doi.org/10.3389/fcell.2021.669145 |
work_keys_str_mv | AT xuqianhui landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT xuhao landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT dengrongshan landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT linanjun landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT muruiqi landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT qizhixuan landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT shenyunuo landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT wangzijie landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT wenjingchao landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT zhaojiaxin landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT wengdi landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy AT huangwen landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy |