Cargando…

Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy

Background: Hepatocellular carcinoma (HCC) is the sixth most common malignancy with a high mortality worldwide. N6-methyladenosine (m6A) may participate extensively in tumor progression. Methods: To reveal the landscape of tumor immune microenvironment (TIME), ESTIMATE analysis, ssGSEA algorithm, an...

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Qianhui, Xu, Hao, Deng, Rongshan, Li, Nanjun, Mu, Ruiqi, Qi, Zhixuan, Shen, Yunuo, Wang, Zijie, Wen, Jingchao, Zhao, Jiaxin, Weng, Di, Huang, Wen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8375309/
https://www.ncbi.nlm.nih.gov/pubmed/34422799
http://dx.doi.org/10.3389/fcell.2021.669145
_version_ 1783740295714701312
author Xu, Qianhui
Xu, Hao
Deng, Rongshan
Li, Nanjun
Mu, Ruiqi
Qi, Zhixuan
Shen, Yunuo
Wang, Zijie
Wen, Jingchao
Zhao, Jiaxin
Weng, Di
Huang, Wen
author_facet Xu, Qianhui
Xu, Hao
Deng, Rongshan
Li, Nanjun
Mu, Ruiqi
Qi, Zhixuan
Shen, Yunuo
Wang, Zijie
Wen, Jingchao
Zhao, Jiaxin
Weng, Di
Huang, Wen
author_sort Xu, Qianhui
collection PubMed
description Background: Hepatocellular carcinoma (HCC) is the sixth most common malignancy with a high mortality worldwide. N6-methyladenosine (m6A) may participate extensively in tumor progression. Methods: To reveal the landscape of tumor immune microenvironment (TIME), ESTIMATE analysis, ssGSEA algorithm, and the CIBERSORT method were used. Taking advantage of consensus clustering, two different HCC categories were screened. We analyzed the correlation of clustering results with TIME and immunotherapy. Then, we yielded a risk signature by systematical bioinformatics analyses. Immunophenoscore (IPS) was implemented to estimate the immunotherapeutic significance of risk signature. Results: The m6A-based clusters were significantly correlated with overall survival (OS), immune score, immunological signature, immune infiltrating, and ICB-associated genes. Risk signature possessed robust prognostic validity and significantly correlated with TIME context. IPS was employed as a surrogate of immunotherapeutic outcome, and patients with low-risk scores showed significantly higher immunophenoscores. Conclusion: Collectively, m6A-based clustering subtype and signature was a robust prognostic indicator and correlated with TIME and immunotherapy, providing novel insight into antitumor management and prognostic prediction in HCC.
format Online
Article
Text
id pubmed-8375309
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-83753092021-08-20 Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy Xu, Qianhui Xu, Hao Deng, Rongshan Li, Nanjun Mu, Ruiqi Qi, Zhixuan Shen, Yunuo Wang, Zijie Wen, Jingchao Zhao, Jiaxin Weng, Di Huang, Wen Front Cell Dev Biol Cell and Developmental Biology Background: Hepatocellular carcinoma (HCC) is the sixth most common malignancy with a high mortality worldwide. N6-methyladenosine (m6A) may participate extensively in tumor progression. Methods: To reveal the landscape of tumor immune microenvironment (TIME), ESTIMATE analysis, ssGSEA algorithm, and the CIBERSORT method were used. Taking advantage of consensus clustering, two different HCC categories were screened. We analyzed the correlation of clustering results with TIME and immunotherapy. Then, we yielded a risk signature by systematical bioinformatics analyses. Immunophenoscore (IPS) was implemented to estimate the immunotherapeutic significance of risk signature. Results: The m6A-based clusters were significantly correlated with overall survival (OS), immune score, immunological signature, immune infiltrating, and ICB-associated genes. Risk signature possessed robust prognostic validity and significantly correlated with TIME context. IPS was employed as a surrogate of immunotherapeutic outcome, and patients with low-risk scores showed significantly higher immunophenoscores. Conclusion: Collectively, m6A-based clustering subtype and signature was a robust prognostic indicator and correlated with TIME and immunotherapy, providing novel insight into antitumor management and prognostic prediction in HCC. Frontiers Media S.A. 2021-08-05 /pmc/articles/PMC8375309/ /pubmed/34422799 http://dx.doi.org/10.3389/fcell.2021.669145 Text en Copyright © 2021 Xu, Xu, Deng, Li, Mu, Qi, Shen, Wang, Wen, Zhao, Weng and Huang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Xu, Qianhui
Xu, Hao
Deng, Rongshan
Li, Nanjun
Mu, Ruiqi
Qi, Zhixuan
Shen, Yunuo
Wang, Zijie
Wen, Jingchao
Zhao, Jiaxin
Weng, Di
Huang, Wen
Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
title Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
title_full Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
title_fullStr Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
title_full_unstemmed Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
title_short Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
title_sort landscape of prognostic m6a rna methylation regulators in hepatocellular carcinoma to aid immunotherapy
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8375309/
https://www.ncbi.nlm.nih.gov/pubmed/34422799
http://dx.doi.org/10.3389/fcell.2021.669145
work_keys_str_mv AT xuqianhui landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT xuhao landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT dengrongshan landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT linanjun landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT muruiqi landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT qizhixuan landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT shenyunuo landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT wangzijie landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT wenjingchao landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT zhaojiaxin landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT wengdi landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy
AT huangwen landscapeofprognosticm6arnamethylationregulatorsinhepatocellularcarcinomatoaidimmunotherapy