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Mycolicibacterium nivoides sp. nov isolated from a peat bog

A fast-growing, non-chromogenic, acid-fast-staining bacterium (DL90(T)) was isolated from a peat bog in northern Minnesota. On the basis of 16S rRNA gene sequence similarity (99.8 % identity with Mycolicibacterium septicum and 98 % with Mycolicibacterium peregrinum) and chemotaxonomic data (fatty ac...

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Autores principales: Dahl, John L., Gatlin III, Wayne, Tran, Phuong M., Sheik, Cody S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8375421/
https://www.ncbi.nlm.nih.gov/pubmed/33646934
http://dx.doi.org/10.1099/ijsem.0.004438
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author Dahl, John L.
Gatlin III, Wayne
Tran, Phuong M.
Sheik, Cody S.
author_facet Dahl, John L.
Gatlin III, Wayne
Tran, Phuong M.
Sheik, Cody S.
author_sort Dahl, John L.
collection PubMed
description A fast-growing, non-chromogenic, acid-fast-staining bacterium (DL90(T)) was isolated from a peat bog in northern Minnesota. On the basis of 16S rRNA gene sequence similarity (99.8 % identity with Mycolicibacterium septicum and 98 % with Mycolicibacterium peregrinum) and chemotaxonomic data (fatty acid content), strain DL90(T) represents a member of the genus Mycolicibacterium. Physiological tests (growth curves, biofilm formation, antibiotic sensitivity, colony morphologies and heat tolerance) and biochemical analysis (arylsulfatase activity and fatty acid profiles) distinguish DL90(T) from its closest relative M. septicum. Phylogenomic reconstruction of the ‘Fortuitium–Vaccae’ clade, digital DNA–DNA hybridization (DDH) values of 61 %, and average nucleotide identity (ANI) values of approximately 95 % indicate that DL90(T) is likely to be diverged from M. septicum. Thus, we propose that DL90(T) represents a novel species, given the name Mycolicibacterium nivoides with the type strain being isolate DL90(T) (=JCM 32796(T)=NCCB 100660(T)).
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spelling pubmed-83754212021-08-20 Mycolicibacterium nivoides sp. nov isolated from a peat bog Dahl, John L. Gatlin III, Wayne Tran, Phuong M. Sheik, Cody S. Int J Syst Evol Microbiol New Taxa A fast-growing, non-chromogenic, acid-fast-staining bacterium (DL90(T)) was isolated from a peat bog in northern Minnesota. On the basis of 16S rRNA gene sequence similarity (99.8 % identity with Mycolicibacterium septicum and 98 % with Mycolicibacterium peregrinum) and chemotaxonomic data (fatty acid content), strain DL90(T) represents a member of the genus Mycolicibacterium. Physiological tests (growth curves, biofilm formation, antibiotic sensitivity, colony morphologies and heat tolerance) and biochemical analysis (arylsulfatase activity and fatty acid profiles) distinguish DL90(T) from its closest relative M. septicum. Phylogenomic reconstruction of the ‘Fortuitium–Vaccae’ clade, digital DNA–DNA hybridization (DDH) values of 61 %, and average nucleotide identity (ANI) values of approximately 95 % indicate that DL90(T) is likely to be diverged from M. septicum. Thus, we propose that DL90(T) represents a novel species, given the name Mycolicibacterium nivoides with the type strain being isolate DL90(T) (=JCM 32796(T)=NCCB 100660(T)). Microbiology Society 2021-03-01 /pmc/articles/PMC8375421/ /pubmed/33646934 http://dx.doi.org/10.1099/ijsem.0.004438 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
spellingShingle New Taxa
Dahl, John L.
Gatlin III, Wayne
Tran, Phuong M.
Sheik, Cody S.
Mycolicibacterium nivoides sp. nov isolated from a peat bog
title Mycolicibacterium nivoides sp. nov isolated from a peat bog
title_full Mycolicibacterium nivoides sp. nov isolated from a peat bog
title_fullStr Mycolicibacterium nivoides sp. nov isolated from a peat bog
title_full_unstemmed Mycolicibacterium nivoides sp. nov isolated from a peat bog
title_short Mycolicibacterium nivoides sp. nov isolated from a peat bog
title_sort mycolicibacterium nivoides sp. nov isolated from a peat bog
topic New Taxa
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8375421/
https://www.ncbi.nlm.nih.gov/pubmed/33646934
http://dx.doi.org/10.1099/ijsem.0.004438
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