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Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies

The use of immunohistochemistry in the reporting of prostate biopsies is an important adjunct when the diagnosis is not definite on haematoxylin and eosin (H&E) morphology alone. The process is however inherently inefficient with delays while waiting for pathologist review to make the request an...

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Autores principales: Chatrian, Andrea, Colling, Richard T., Browning, Lisa, Alham, Nasullah Khalid, Sirinukunwattana, Korsuk, Malacrino, Stefano, Haghighat, Maryam, Aberdeen, Alan, Monks, Amelia, Moxley-Wyles, Benjamin, Rakha, Emad, Snead, David. R. J., Rittscher, Jens, Verrill, Clare
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group US 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8376647/
https://www.ncbi.nlm.nih.gov/pubmed/34017063
http://dx.doi.org/10.1038/s41379-021-00826-6
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author Chatrian, Andrea
Colling, Richard T.
Browning, Lisa
Alham, Nasullah Khalid
Sirinukunwattana, Korsuk
Malacrino, Stefano
Haghighat, Maryam
Aberdeen, Alan
Monks, Amelia
Moxley-Wyles, Benjamin
Rakha, Emad
Snead, David. R. J.
Rittscher, Jens
Verrill, Clare
author_facet Chatrian, Andrea
Colling, Richard T.
Browning, Lisa
Alham, Nasullah Khalid
Sirinukunwattana, Korsuk
Malacrino, Stefano
Haghighat, Maryam
Aberdeen, Alan
Monks, Amelia
Moxley-Wyles, Benjamin
Rakha, Emad
Snead, David. R. J.
Rittscher, Jens
Verrill, Clare
author_sort Chatrian, Andrea
collection PubMed
description The use of immunohistochemistry in the reporting of prostate biopsies is an important adjunct when the diagnosis is not definite on haematoxylin and eosin (H&E) morphology alone. The process is however inherently inefficient with delays while waiting for pathologist review to make the request and duplicated effort reviewing a case more than once. In this study, we aimed to capture the workflow implications of immunohistochemistry requests and demonstrate a novel artificial intelligence tool to identify cases in which immunohistochemistry (IHC) is required and generate an automated request. We conducted audits of the workflow for prostate biopsies in order to understand the potential implications of automated immunohistochemistry requesting and collected prospective cases to train a deep neural network algorithm to detect tissue regions that presented ambiguous morphology on whole slide images. These ambiguous foci were selected on the basis of the pathologist requesting immunohistochemistry to aid diagnosis. A gradient boosted trees classifier was then used to make a slide-level prediction based on the outputs of the neural network prediction. The algorithm was trained on annotations of 219 immunohistochemistry-requested and 80 control images, and tested by threefold cross-validation. Validation was conducted on a separate validation dataset of 222 images. Non IHC-requested cases were diagnosed in 17.9 min on average, while IHC-requested cases took 33.4 min over multiple reporting sessions. We estimated 11 min could be saved on average per case by automated IHC requesting, by removing duplication of effort. The tool attained 99% accuracy and 0.99 Area Under the Curve (AUC) on the test data. In the validation, the average agreement with pathologists was 0.81, with a mean AUC of 0.80. We demonstrate the proof-of-principle that an AI tool making automated immunohistochemistry requests could create a significantly leaner workflow and result in pathologist time savings.
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spelling pubmed-83766472021-09-02 Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies Chatrian, Andrea Colling, Richard T. Browning, Lisa Alham, Nasullah Khalid Sirinukunwattana, Korsuk Malacrino, Stefano Haghighat, Maryam Aberdeen, Alan Monks, Amelia Moxley-Wyles, Benjamin Rakha, Emad Snead, David. R. J. Rittscher, Jens Verrill, Clare Mod Pathol Article The use of immunohistochemistry in the reporting of prostate biopsies is an important adjunct when the diagnosis is not definite on haematoxylin and eosin (H&E) morphology alone. The process is however inherently inefficient with delays while waiting for pathologist review to make the request and duplicated effort reviewing a case more than once. In this study, we aimed to capture the workflow implications of immunohistochemistry requests and demonstrate a novel artificial intelligence tool to identify cases in which immunohistochemistry (IHC) is required and generate an automated request. We conducted audits of the workflow for prostate biopsies in order to understand the potential implications of automated immunohistochemistry requesting and collected prospective cases to train a deep neural network algorithm to detect tissue regions that presented ambiguous morphology on whole slide images. These ambiguous foci were selected on the basis of the pathologist requesting immunohistochemistry to aid diagnosis. A gradient boosted trees classifier was then used to make a slide-level prediction based on the outputs of the neural network prediction. The algorithm was trained on annotations of 219 immunohistochemistry-requested and 80 control images, and tested by threefold cross-validation. Validation was conducted on a separate validation dataset of 222 images. Non IHC-requested cases were diagnosed in 17.9 min on average, while IHC-requested cases took 33.4 min over multiple reporting sessions. We estimated 11 min could be saved on average per case by automated IHC requesting, by removing duplication of effort. The tool attained 99% accuracy and 0.99 Area Under the Curve (AUC) on the test data. In the validation, the average agreement with pathologists was 0.81, with a mean AUC of 0.80. We demonstrate the proof-of-principle that an AI tool making automated immunohistochemistry requests could create a significantly leaner workflow and result in pathologist time savings. Nature Publishing Group US 2021-05-20 2021 /pmc/articles/PMC8376647/ /pubmed/34017063 http://dx.doi.org/10.1038/s41379-021-00826-6 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chatrian, Andrea
Colling, Richard T.
Browning, Lisa
Alham, Nasullah Khalid
Sirinukunwattana, Korsuk
Malacrino, Stefano
Haghighat, Maryam
Aberdeen, Alan
Monks, Amelia
Moxley-Wyles, Benjamin
Rakha, Emad
Snead, David. R. J.
Rittscher, Jens
Verrill, Clare
Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies
title Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies
title_full Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies
title_fullStr Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies
title_full_unstemmed Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies
title_short Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies
title_sort artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8376647/
https://www.ncbi.nlm.nih.gov/pubmed/34017063
http://dx.doi.org/10.1038/s41379-021-00826-6
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