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Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies
The use of immunohistochemistry in the reporting of prostate biopsies is an important adjunct when the diagnosis is not definite on haematoxylin and eosin (H&E) morphology alone. The process is however inherently inefficient with delays while waiting for pathologist review to make the request an...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group US
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8376647/ https://www.ncbi.nlm.nih.gov/pubmed/34017063 http://dx.doi.org/10.1038/s41379-021-00826-6 |
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author | Chatrian, Andrea Colling, Richard T. Browning, Lisa Alham, Nasullah Khalid Sirinukunwattana, Korsuk Malacrino, Stefano Haghighat, Maryam Aberdeen, Alan Monks, Amelia Moxley-Wyles, Benjamin Rakha, Emad Snead, David. R. J. Rittscher, Jens Verrill, Clare |
author_facet | Chatrian, Andrea Colling, Richard T. Browning, Lisa Alham, Nasullah Khalid Sirinukunwattana, Korsuk Malacrino, Stefano Haghighat, Maryam Aberdeen, Alan Monks, Amelia Moxley-Wyles, Benjamin Rakha, Emad Snead, David. R. J. Rittscher, Jens Verrill, Clare |
author_sort | Chatrian, Andrea |
collection | PubMed |
description | The use of immunohistochemistry in the reporting of prostate biopsies is an important adjunct when the diagnosis is not definite on haematoxylin and eosin (H&E) morphology alone. The process is however inherently inefficient with delays while waiting for pathologist review to make the request and duplicated effort reviewing a case more than once. In this study, we aimed to capture the workflow implications of immunohistochemistry requests and demonstrate a novel artificial intelligence tool to identify cases in which immunohistochemistry (IHC) is required and generate an automated request. We conducted audits of the workflow for prostate biopsies in order to understand the potential implications of automated immunohistochemistry requesting and collected prospective cases to train a deep neural network algorithm to detect tissue regions that presented ambiguous morphology on whole slide images. These ambiguous foci were selected on the basis of the pathologist requesting immunohistochemistry to aid diagnosis. A gradient boosted trees classifier was then used to make a slide-level prediction based on the outputs of the neural network prediction. The algorithm was trained on annotations of 219 immunohistochemistry-requested and 80 control images, and tested by threefold cross-validation. Validation was conducted on a separate validation dataset of 222 images. Non IHC-requested cases were diagnosed in 17.9 min on average, while IHC-requested cases took 33.4 min over multiple reporting sessions. We estimated 11 min could be saved on average per case by automated IHC requesting, by removing duplication of effort. The tool attained 99% accuracy and 0.99 Area Under the Curve (AUC) on the test data. In the validation, the average agreement with pathologists was 0.81, with a mean AUC of 0.80. We demonstrate the proof-of-principle that an AI tool making automated immunohistochemistry requests could create a significantly leaner workflow and result in pathologist time savings. |
format | Online Article Text |
id | pubmed-8376647 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group US |
record_format | MEDLINE/PubMed |
spelling | pubmed-83766472021-09-02 Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies Chatrian, Andrea Colling, Richard T. Browning, Lisa Alham, Nasullah Khalid Sirinukunwattana, Korsuk Malacrino, Stefano Haghighat, Maryam Aberdeen, Alan Monks, Amelia Moxley-Wyles, Benjamin Rakha, Emad Snead, David. R. J. Rittscher, Jens Verrill, Clare Mod Pathol Article The use of immunohistochemistry in the reporting of prostate biopsies is an important adjunct when the diagnosis is not definite on haematoxylin and eosin (H&E) morphology alone. The process is however inherently inefficient with delays while waiting for pathologist review to make the request and duplicated effort reviewing a case more than once. In this study, we aimed to capture the workflow implications of immunohistochemistry requests and demonstrate a novel artificial intelligence tool to identify cases in which immunohistochemistry (IHC) is required and generate an automated request. We conducted audits of the workflow for prostate biopsies in order to understand the potential implications of automated immunohistochemistry requesting and collected prospective cases to train a deep neural network algorithm to detect tissue regions that presented ambiguous morphology on whole slide images. These ambiguous foci were selected on the basis of the pathologist requesting immunohistochemistry to aid diagnosis. A gradient boosted trees classifier was then used to make a slide-level prediction based on the outputs of the neural network prediction. The algorithm was trained on annotations of 219 immunohistochemistry-requested and 80 control images, and tested by threefold cross-validation. Validation was conducted on a separate validation dataset of 222 images. Non IHC-requested cases were diagnosed in 17.9 min on average, while IHC-requested cases took 33.4 min over multiple reporting sessions. We estimated 11 min could be saved on average per case by automated IHC requesting, by removing duplication of effort. The tool attained 99% accuracy and 0.99 Area Under the Curve (AUC) on the test data. In the validation, the average agreement with pathologists was 0.81, with a mean AUC of 0.80. We demonstrate the proof-of-principle that an AI tool making automated immunohistochemistry requests could create a significantly leaner workflow and result in pathologist time savings. Nature Publishing Group US 2021-05-20 2021 /pmc/articles/PMC8376647/ /pubmed/34017063 http://dx.doi.org/10.1038/s41379-021-00826-6 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Chatrian, Andrea Colling, Richard T. Browning, Lisa Alham, Nasullah Khalid Sirinukunwattana, Korsuk Malacrino, Stefano Haghighat, Maryam Aberdeen, Alan Monks, Amelia Moxley-Wyles, Benjamin Rakha, Emad Snead, David. R. J. Rittscher, Jens Verrill, Clare Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies |
title | Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies |
title_full | Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies |
title_fullStr | Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies |
title_full_unstemmed | Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies |
title_short | Artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies |
title_sort | artificial intelligence for advance requesting of immunohistochemistry in diagnostically uncertain prostate biopsies |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8376647/ https://www.ncbi.nlm.nih.gov/pubmed/34017063 http://dx.doi.org/10.1038/s41379-021-00826-6 |
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